Amino acid dipepetide frequency for Ceriporiopsis subvermispora (strain B) (White-rot fungus) (Gelatoporia subvermispora)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10^-3.

For more information see sequence space article on Wikipedia.

	Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Pro	Gln	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
Ala	9.629AlaAla: 9.629 ± 0.065	1.235AlaCys: 1.235 ± 0.017	4.547AlaAsp: 4.547 ± 0.034	5.177AlaGlu: 5.177 ± 0.043	3.36AlaPhe: 3.36 ± 0.028	5.879AlaGly: 5.879 ± 0.042	2.371AlaHis: 2.371 ± 0.024	4.16AlaIle: 4.16 ± 0.032	3.6AlaLys: 3.6 ± 0.037	8.995AlaLeu: 8.995 ± 0.044	2.022AlaMet: 2.022 ± 0.02	2.704AlaAsn: 2.704 ± 0.024	5.928AlaPro: 5.928 ± 0.059	3.835AlaGln: 3.835 ± 0.032	6.128AlaArg: 6.128 ± 0.043	8.03AlaSer: 8.03 ± 0.057	5.379AlaThr: 5.379 ± 0.031	5.839AlaVal: 5.839 ± 0.038	1.254AlaTrp: 1.254 ± 0.017	2.265AlaTyr: 2.265 ± 0.024	0.0AlaXaa: 0.0 ± 0.0
Cys	1.206CysAla: 1.206 ± 0.015	0.258CysCys: 0.258 ± 0.008	0.693CysAsp: 0.693 ± 0.012	0.631CysGlu: 0.631 ± 0.011	0.49CysPhe: 0.49 ± 0.011	0.95CysGly: 0.95 ± 0.015	0.331CysHis: 0.331 ± 0.008	0.735CysIle: 0.735 ± 0.011	0.51CysLys: 0.51 ± 0.011	1.294CysLeu: 1.294 ± 0.017	0.301CysMet: 0.301 ± 0.008	0.404CysAsn: 0.404 ± 0.009	0.797CysPro: 0.797 ± 0.015	0.428CysGln: 0.428 ± 0.011	0.826CysArg: 0.826 ± 0.012	1.062CysSer: 1.062 ± 0.017	0.833CysThr: 0.833 ± 0.013	0.892CysVal: 0.892 ± 0.015	0.211CysTrp: 0.211 ± 0.006	0.334CysTyr: 0.334 ± 0.008	0.0CysXaa: 0.0 ± 0.0
Asp	5.467AspAla: 5.467 ± 0.036	0.655AspCys: 0.655 ± 0.011	4.106AspAsp: 4.106 ± 0.045	4.316AspGlu: 4.316 ± 0.037	2.022AspPhe: 2.022 ± 0.02	4.006AspGly: 4.006 ± 0.039	1.246AspHis: 1.246 ± 0.016	3.04AspIle: 3.04 ± 0.026	2.05AspLys: 2.05 ± 0.021	4.89AspLeu: 4.89 ± 0.033	1.26AspMet: 1.26 ± 0.017	1.609AspAsn: 1.609 ± 0.018	3.513AspPro: 3.513 ± 0.029	1.569AspGln: 1.569 ± 0.018	2.97AspArg: 2.97 ± 0.03	3.865AspSer: 3.865 ± 0.03	3.123AspThr: 3.123 ± 0.024	4.265AspVal: 4.265 ± 0.032	0.887AspTrp: 0.887 ± 0.014	1.426AspTyr: 1.426 ± 0.016	0.0AspXaa: 0.0 ± 0.0
Glu	5.085GluAla: 5.085 ± 0.036	0.698GluCys: 0.698 ± 0.014	4.118GluAsp: 4.118 ± 0.04	5.073GluGlu: 5.073 ± 0.057	1.823GluPhe: 1.823 ± 0.017	3.612GluGly: 3.612 ± 0.03	1.61GluHis: 1.61 ± 0.02	2.741GluIle: 2.741 ± 0.026	2.836GluLys: 2.836 ± 0.032	5.419GluLeu: 5.419 ± 0.044	1.326GluMet: 1.326 ± 0.017	1.761GluAsn: 1.761 ± 0.018	2.891GluPro: 2.891 ± 0.027	2.386GluGln: 2.386 ± 0.025	4.235GluArg: 4.235 ± 0.036	3.867GluSer: 3.867 ± 0.029	3.063GluThr: 3.063 ± 0.028	3.701GluVal: 3.701 ± 0.027	0.894GluTrp: 0.894 ± 0.012	1.537GluTyr: 1.537 ± 0.018	0.0GluXaa: 0.0 ± 0.0
Phe	3.216PheAla: 3.216 ± 0.027	0.564PheCys: 0.564 ± 0.01	2.17PheAsp: 2.17 ± 0.022	1.973PheGlu: 1.973 ± 0.02	1.447PhePhe: 1.447 ± 0.017	2.68PheGly: 2.68 ± 0.027	0.877PheHis: 0.877 ± 0.013	1.681PheIle: 1.681 ± 0.019	1.325PheLys: 1.325 ± 0.018	3.343PheLeu: 3.343 ± 0.032	0.768PheMet: 0.768 ± 0.012	1.261PheAsn: 1.261 ± 0.017	2.014PhePro: 2.014 ± 0.019	1.15PheGln: 1.15 ± 0.015	1.997PheArg: 1.997 ± 0.021	3.034PheSer: 3.034 ± 0.029	2.076PheThr: 2.076 ± 0.022	2.522PheVal: 2.522 ± 0.02	0.591PheTrp: 0.591 ± 0.012	1.005PheTyr: 1.005 ± 0.015	0.0PheXaa: 0.0 ± 0.0
Gly	5.593GlyAla: 5.593 ± 0.041	0.884GlyCys: 0.884 ± 0.013	3.474GlyAsp: 3.474 ± 0.027	3.485GlyGlu: 3.485 ± 0.028	2.417GlyPhe: 2.417 ± 0.023	5.111GlyGly: 5.111 ± 0.051	1.8GlyHis: 1.8 ± 0.026	3.19GlyIle: 3.19 ± 0.028	2.975GlyLys: 2.975 ± 0.03	5.673GlyLeu: 5.673 ± 0.04	1.508GlyMet: 1.508 ± 0.021	2.105GlyAsn: 2.105 ± 0.025	3.546GlyPro: 3.546 ± 0.03	2.317GlyGln: 2.317 ± 0.024	4.298GlyArg: 4.298 ± 0.035	5.639GlySer: 5.639 ± 0.039	4.175GlyThr: 4.175 ± 0.033	4.237GlyVal: 4.237 ± 0.032	1.11GlyTrp: 1.11 ± 0.017	1.755GlyTyr: 1.755 ± 0.018	0.0GlyXaa: 0.0 ± 0.0
His	2.384HisAla: 2.384 ± 0.022	0.357HisCys: 0.357 ± 0.008	1.416HisAsp: 1.416 ± 0.016	1.388HisGlu: 1.388 ± 0.018	0.959HisPhe: 0.959 ± 0.013	1.708HisGly: 1.708 ± 0.018	0.817HisHis: 0.817 ± 0.015	1.356HisIle: 1.356 ± 0.017	0.848HisLys: 0.848 ± 0.012	2.557HisLeu: 2.557 ± 0.027	0.558HisMet: 0.558 ± 0.011	0.771HisAsn: 0.771 ± 0.012	1.892HisPro: 1.892 ± 0.02	0.904HisGln: 0.904 ± 0.014	1.712HisArg: 1.712 ± 0.02	2.052HisSer: 2.052 ± 0.024	1.563HisThr: 1.563 ± 0.021	1.739HisVal: 1.739 ± 0.018	0.364HisTrp: 0.364 ± 0.009	0.678HisTyr: 0.678 ± 0.011	0.0HisXaa: 0.0 ± 0.0
Ile	4.339IleAla: 4.339 ± 0.032	0.746IleCys: 0.746 ± 0.012	2.712IleAsp: 2.712 ± 0.023	2.58IleGlu: 2.58 ± 0.023	1.783IlePhe: 1.783 ± 0.022	2.868IleGly: 2.868 ± 0.028	1.13IleHis: 1.13 ± 0.014	2.339IleIle: 2.339 ± 0.023	1.817IleLys: 1.817 ± 0.019	4.532IleLeu: 4.532 ± 0.034	0.997IleMet: 0.997 ± 0.015	1.477IleAsn: 1.477 ± 0.017	3.202IlePro: 3.202 ± 0.03	1.686IleGln: 1.686 ± 0.018	2.925IleArg: 2.925 ± 0.026	3.695IleSer: 3.695 ± 0.03	2.73IleThr: 2.73 ± 0.024	3.337IleVal: 3.337 ± 0.031	0.801IleTrp: 0.801 ± 0.014	1.269IleTyr: 1.269 ± 0.018	0.0IleXaa: 0.0 ± 0.0
Lys	3.825LysAla: 3.825 ± 0.036	0.463LysCys: 0.463 ± 0.01	2.236LysAsp: 2.236 ± 0.025	2.701LysGlu: 2.701 ± 0.033	1.24LysPhe: 1.24 ± 0.016	2.539LysGly: 2.539 ± 0.026	1.047LysHis: 1.047 ± 0.015	1.801LysIle: 1.801 ± 0.019	2.479LysLys: 2.479 ± 0.041	3.664LysLeu: 3.664 ± 0.029	0.828LysMet: 0.828 ± 0.013	1.237LysAsn: 1.237 ± 0.018	2.292LysPro: 2.292 ± 0.026	1.537LysGln: 1.537 ± 0.019	3.156LysArg: 3.156 ± 0.031	2.772LysSer: 2.772 ± 0.024	2.396LysThr: 2.396 ± 0.022	2.454LysVal: 2.454 ± 0.025	0.619LysTrp: 0.619 ± 0.012	1.167LysTyr: 1.167 ± 0.017	0.0LysXaa: 0.0 ± 0.0
Leu	8.552LeuAla: 8.552 ± 0.047	1.388LeuCys: 1.388 ± 0.016	5.331LeuAsp: 5.331 ± 0.038	5.443LeuGlu: 5.443 ± 0.036	3.313LeuPhe: 3.313 ± 0.026	5.707LeuGly: 5.707 ± 0.041	2.58LeuHis: 2.58 ± 0.026	3.814LeuIle: 3.814 ± 0.034	3.713LeuLys: 3.713 ± 0.032	8.895LeuLeu: 8.895 ± 0.066	1.796LeuMet: 1.796 ± 0.017	2.945LeuAsn: 2.945 ± 0.026	6.14LeuPro: 6.14 ± 0.042	3.858LeuGln: 3.858 ± 0.034	6.674LeuArg: 6.674 ± 0.045	7.809LeuSer: 7.809 ± 0.053	5.185LeuThr: 5.185 ± 0.034	5.908LeuVal: 5.908 ± 0.046	1.336LeuTrp: 1.336 ± 0.021	2.388LeuTyr: 2.388 ± 0.023	0.0LeuXaa: 0.0 ± 0.0
Met	1.89MetAla: 1.89 ± 0.02	0.275MetCys: 0.275 ± 0.007	1.177MetAsp: 1.177 ± 0.016	1.113MetGlu: 1.113 ± 0.014	0.757MetPhe: 0.757 ± 0.012	1.265MetGly: 1.265 ± 0.017	0.61MetHis: 0.61 ± 0.012	0.91MetIle: 0.91 ± 0.013	0.898MetLys: 0.898 ± 0.014	2.016MetLeu: 2.016 ± 0.02	0.511MetMet: 0.511 ± 0.01	0.704MetAsn: 0.704 ± 0.013	1.367MetPro: 1.367 ± 0.018	0.941MetGln: 0.941 ± 0.016	1.452MetArg: 1.452 ± 0.017	2.097MetSer: 2.097 ± 0.02	1.258MetThr: 1.258 ± 0.017	1.186MetVal: 1.186 ± 0.015	0.295MetTrp: 0.295 ± 0.007	0.556MetTyr: 0.556 ± 0.01	0.0MetXaa: 0.0 ± 0.0
Asn	3.105AsnAla: 3.105 ± 0.027	0.384AsnCys: 0.384 ± 0.009	1.626AsnAsp: 1.626 ± 0.019	1.605AsnGlu: 1.605 ± 0.021	1.167AsnPhe: 1.167 ± 0.016	2.427AsnGly: 2.427 ± 0.028	0.719AsnHis: 0.719 ± 0.013	1.823AsnIle: 1.823 ± 0.021	1.094AsnLys: 1.094 ± 0.016	2.879AsnLeu: 2.879 ± 0.028	0.739AsnMet: 0.739 ± 0.012	1.077AsnAsn: 1.077 ± 0.018	2.027AsnPro: 2.027 ± 0.02	0.956AsnGln: 0.956 ± 0.015	1.593AsnArg: 1.593 ± 0.016	2.29AsnSer: 2.29 ± 0.023	1.924AsnThr: 1.924 ± 0.024	2.391AsnVal: 2.391 ± 0.023	0.472AsnTrp: 0.472 ± 0.01	0.818AsnTyr: 0.818 ± 0.01	0.0AsnXaa: 0.0 ± 0.0
Pro	6.305ProAla: 6.305 ± 0.057	0.577ProCys: 0.577 ± 0.013	3.511ProAsp: 3.511 ± 0.031	3.924ProGlu: 3.924 ± 0.032	2.146ProPhe: 2.146 ± 0.021	4.14ProGly: 4.14 ± 0.039	1.614ProHis: 1.614 ± 0.019	2.557ProIle: 2.557 ± 0.024	2.204ProLys: 2.204 ± 0.025	5.416ProLeu: 5.416 ± 0.035	1.111ProMet: 1.111 ± 0.015	1.937ProAsn: 1.937 ± 0.021	6.351ProPro: 6.351 ± 0.093	2.468ProGln: 2.468 ± 0.028	4.028ProArg: 4.028 ± 0.039	6.93ProSer: 6.93 ± 0.063	4.271ProThr: 4.271 ± 0.033	4.034ProVal: 4.034 ± 0.033	0.715ProTrp: 0.715 ± 0.013	1.563ProTyr: 1.563 ± 0.02	0.0ProXaa: 0.0 ± 0.0
Gln	3.443GlnAla: 3.443 ± 0.032	0.523GlnCys: 0.523 ± 0.01	2.007GlnAsp: 2.007 ± 0.021	2.221GlnGlu: 2.221 ± 0.022	1.253GlnPhe: 1.253 ± 0.014	2.176GlnGly: 2.176 ± 0.022	1.114GlnHis: 1.114 ± 0.015	1.729GlnIle: 1.729 ± 0.019	1.49GlnLys: 1.49 ± 0.019	3.516GlnLeu: 3.516 ± 0.031	0.841GlnMet: 0.841 ± 0.015	1.249GlnAsn: 1.249 ± 0.017	2.427GlnPro: 2.427 ± 0.03	1.907GlnGln: 1.907 ± 0.033	2.639GlnArg: 2.639 ± 0.023	2.955GlnSer: 2.955 ± 0.031	2.229GlnThr: 2.229 ± 0.023	2.188GlnVal: 2.188 ± 0.02	0.58GlnTrp: 0.58 ± 0.011	1.103GlnTyr: 1.103 ± 0.015	0.0GlnXaa: 0.0 ± 0.0
Arg	6.036ArgAla: 6.036 ± 0.043	0.868ArgCys: 0.868 ± 0.014	3.522ArgAsp: 3.522 ± 0.028	4.011ArgGlu: 4.011 ± 0.038	2.145ArgPhe: 2.145 ± 0.02	3.943ArgGly: 3.943 ± 0.034	1.757ArgHis: 1.757 ± 0.019	3.101ArgIle: 3.101 ± 0.027	3.189ArgLys: 3.189 ± 0.033	6.002ArgLeu: 6.002 ± 0.038	1.439ArgMet: 1.439 ± 0.018	1.973ArgAsn: 1.973 ± 0.02	3.974ArgPro: 3.974 ± 0.038	2.417ArgGln: 2.417 ± 0.025	5.796ArgArg: 5.796 ± 0.049	5.292ArgSer: 5.292 ± 0.042	3.944ArgThr: 3.944 ± 0.032	3.985ArgVal: 3.985 ± 0.03	1.044ArgTrp: 1.044 ± 0.015	1.641ArgTyr: 1.641 ± 0.02	0.0ArgXaa: 0.0 ± 0.0
Ser	7.686SerAla: 7.686 ± 0.051	0.978SerCys: 0.978 ± 0.015	4.41SerAsp: 4.41 ± 0.03	4.075SerGlu: 4.075 ± 0.029	2.891SerPhe: 2.891 ± 0.026	5.759SerGly: 5.759 ± 0.041	2.053SerHis: 2.053 ± 0.024	3.777SerIle: 3.777 ± 0.03	2.966SerLys: 2.966 ± 0.028	7.626SerLeu: 7.626 ± 0.042	1.73SerMet: 1.73 ± 0.021	2.478SerAsn: 2.478 ± 0.023	6.317SerPro: 6.317 ± 0.059	3.119SerGln: 3.119 ± 0.031	5.378SerArg: 5.378 ± 0.041	9.366SerSer: 9.366 ± 0.085	5.71SerThr: 5.71 ± 0.039	5.174SerVal: 5.174 ± 0.036	1.057SerTrp: 1.057 ± 0.015	1.918SerTyr: 1.918 ± 0.019	0.0SerXaa: 0.0 ± 0.0
Thr	5.29ThrAla: 5.29 ± 0.035	0.819ThrCys: 0.819 ± 0.014	2.835ThrAsp: 2.835 ± 0.027	2.838ThrGlu: 2.838 ± 0.025	2.382ThrPhe: 2.382 ± 0.02	3.951ThrGly: 3.951 ± 0.033	1.53ThrHis: 1.53 ± 0.02	3.017ThrIle: 3.017 ± 0.027	2.108ThrLys: 2.108 ± 0.025	5.846ThrLeu: 5.846 ± 0.043	1.198ThrMet: 1.198 ± 0.016	1.833ThrAsn: 1.833 ± 0.022	4.659ThrPro: 4.659 ± 0.042	2.072ThrGln: 2.072 ± 0.023	3.63ThrArg: 3.63 ± 0.031	5.637ThrSer: 5.637 ± 0.037	3.933ThrThr: 3.933 ± 0.032	3.943ThrVal: 3.943 ± 0.028	0.86ThrTrp: 0.86 ± 0.015	1.622ThrTyr: 1.622 ± 0.022	0.0ThrXaa: 0.0 ± 0.0
Val	5.742ValAla: 5.742 ± 0.04	0.893ValCys: 0.893 ± 0.015	3.815ValAsp: 3.815 ± 0.027	3.879ValGlu: 3.879 ± 0.031	2.486ValPhe: 2.486 ± 0.024	3.864ValGly: 3.864 ± 0.031	1.756ValHis: 1.756 ± 0.017	3.068ValIle: 3.068 ± 0.026	2.687ValLys: 2.687 ± 0.025	6.353ValLeu: 6.353 ± 0.041	1.384ValMet: 1.384 ± 0.016	2.081ValAsn: 2.081 ± 0.022	4.278ValPro: 4.278 ± 0.035	2.585ValGln: 2.585 ± 0.023	4.051ValArg: 4.051 ± 0.03	5.009ValSer: 5.009 ± 0.032	3.687ValThr: 3.687 ± 0.026	4.679ValVal: 4.679 ± 0.039	1.027ValTrp: 1.027 ± 0.016	1.79ValTyr: 1.79 ± 0.021	0.0ValXaa: 0.0 ± 0.0
Trp	1.222TrpAla: 1.222 ± 0.016	0.215TrpCys: 0.215 ± 0.007	0.981TrpAsp: 0.981 ± 0.017	0.841TrpGlu: 0.841 ± 0.013	0.544TrpPhe: 0.544 ± 0.011	0.843TrpGly: 0.843 ± 0.014	0.365TrpHis: 0.365 ± 0.009	0.764TrpIle: 0.764 ± 0.013	0.707TrpLys: 0.707 ± 0.014	1.387TrpLeu: 1.387 ± 0.017	0.375TrpMet: 0.375 ± 0.009	0.597TrpAsn: 0.597 ± 0.01	0.68TrpPro: 0.68 ± 0.011	0.544TrpGln: 0.544 ± 0.011	1.085TrpArg: 1.085 ± 0.014	1.126TrpSer: 1.126 ± 0.015	0.919TrpThr: 0.919 ± 0.015	0.882TrpVal: 0.882 ± 0.014	0.283TrpTrp: 0.283 ± 0.007	0.43TrpTyr: 0.43 ± 0.008	0.0TrpXaa: 0.0 ± 0.0
Tyr	2.323TyrAla: 2.323 ± 0.022	0.403TyrCys: 0.403 ± 0.009	1.597TyrAsp: 1.597 ± 0.021	1.402TyrGlu: 1.402 ± 0.018	1.068TyrPhe: 1.068 ± 0.015	1.865TyrGly: 1.865 ± 0.02	0.696TyrHis: 0.696 ± 0.012	1.36TyrIle: 1.36 ± 0.017	0.956TyrLys: 0.956 ± 0.016	2.471TyrLeu: 2.471 ± 0.024	0.585TyrMet: 0.585 ± 0.011	0.914TyrAsn: 0.914 ± 0.015	1.509TyrPro: 1.509 ± 0.019	0.913TyrGln: 0.913 ± 0.016	1.51TyrArg: 1.51 ± 0.016	1.942TyrSer: 1.942 ± 0.021	1.603TyrThr: 1.603 ± 0.017	1.756TyrVal: 1.756 ± 0.019	0.39TyrTrp: 0.39 ± 0.008	0.804TyrTyr: 0.804 ± 0.015	0.0TyrXaa: 0.0 ± 0.0
Xaa	0.0XaaAla: 0.0 ± 0.0	0.0XaaCys: 0.0 ± 0.0	0.0XaaAsp: 0.0 ± 0.0	0.0XaaGlu: 0.0 ± 0.0	0.0XaaPhe: 0.0 ± 0.0	0.0XaaGly: 0.0 ± 0.0	0.0XaaHis: 0.0 ± 0.0	0.0XaaIle: 0.0 ± 0.0	0.0XaaLys: 0.0 ± 0.0	0.0XaaLeu: 0.0 ± 0.0	0.0XaaMet: 0.0 ± 0.0	0.0XaaAsn: 0.0 ± 0.0	0.0XaaPro: 0.0 ± 0.0	0.0XaaGln: 0.0 ± 0.0	0.0XaaArg: 0.0 ± 0.0	0.0XaaSer: 0.0 ± 0.0	0.0XaaThr: 0.0 ± 0.0	0.0XaaVal: 0.0 ± 0.0	0.0XaaTrp: 0.0 ± 0.0	0.0XaaTyr: 0.0 ± 0.0	0.0XaaXaa: 0.0 ± 0.0

Statistics based on 12078 proteins (5150447 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

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