Lactococcus phage 38502

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 60 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1P8BKA8|A0A1P8BKA8_9CAUD Uncharacterized protein OS=Lactococcus phage 38502 OX=1868846 GN=DS38502_24 PE=4 SV=1
MM1 pKa = 7.23KK2 pKa = 10.11KK3 pKa = 8.64YY4 pKa = 9.83WVVEE8 pKa = 3.9DD9 pKa = 3.74HH10 pKa = 6.88LGGGFYY16 pKa = 10.8LMPEE20 pKa = 4.1DD21 pKa = 4.04TPEE24 pKa = 3.89EE25 pKa = 3.99EE26 pKa = 4.03LRR28 pKa = 11.84EE29 pKa = 4.04VEE31 pKa = 5.18VYY33 pKa = 10.96CDD35 pKa = 3.23TCGDD39 pKa = 3.54NDD41 pKa = 4.7SIIGQFSNWNQLKK54 pKa = 10.45KK55 pKa = 11.08EE56 pKa = 4.06MTDD59 pKa = 3.5DD60 pKa = 4.56EE61 pKa = 5.2GWCPYY66 pKa = 10.28SDD68 pKa = 5.14EE69 pKa = 4.2YY70 pKa = 10.46LQSVFEE76 pKa = 4.68EE77 pKa = 4.75DD78 pKa = 3.42NQQ80 pKa = 3.87

Molecular weight: 9.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1P8BKB6|A0A1P8BKB6_9CAUD Portal protein OS=Lactococcus phage 38502 OX=1868846 GN=DS38502_38 PE=4 SV=1
MM1 pKa = 7.27KK2 pKa = 10.49SSWKK6 pKa = 9.83KK7 pKa = 9.38QRR9 pKa = 11.84QAAKK13 pKa = 9.81KK14 pKa = 10.21RR15 pKa = 11.84KK16 pKa = 8.9IKK18 pKa = 10.22CLRR21 pKa = 11.84IKK23 pKa = 10.43HH24 pKa = 5.93RR25 pKa = 11.84LIKK28 pKa = 10.26RR29 pKa = 11.84YY30 pKa = 9.72APNIEE35 pKa = 4.12TFIKK39 pKa = 10.16LFNGIKK45 pKa = 10.05HH46 pKa = 5.55INGYY50 pKa = 9.49RR51 pKa = 11.84KK52 pKa = 9.5SFYY55 pKa = 10.43RR56 pKa = 11.84YY57 pKa = 6.53WQKK60 pKa = 9.72LTSIKK65 pKa = 10.69YY66 pKa = 10.26NSFSYY71 pKa = 11.04

Molecular weight: 8.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

60

0

60

10388

43

864

173.1

19.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.122 ± 0.441

0.741 ± 0.125

5.968 ± 0.283

6.681 ± 0.501

4.39 ± 0.18

6.575 ± 0.55

1.454 ± 0.131

7.21 ± 0.308

9.136 ± 0.61

7.942 ± 0.312

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.532 ± 0.174

6.18 ± 0.397

3.052 ± 0.174

4.245 ± 0.378

3.639 ± 0.318

7.018 ± 0.365

6.257 ± 0.504

5.824 ± 0.249

1.357 ± 0.141

3.677 ± 0.225
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski