Chromatium okenii

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Chromatium

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2811 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S7XNB3|A0A2S7XNB3_9GAMM RimK family alpha-L-glutamate ligase OS=Chromatium okenii OX=61644 GN=CXB77_13135 PE=4 SV=1
MM1 pKa = 6.83FASRR5 pKa = 11.84AHH7 pKa = 6.18AVLITDD13 pKa = 4.73AQLQDD18 pKa = 4.44LDD20 pKa = 3.85QLLAGLDD27 pKa = 3.5ADD29 pKa = 3.99VEE31 pKa = 4.38PWLVASNQDD40 pKa = 3.28AMPLIFKK47 pKa = 10.64ALAHH51 pKa = 6.95PDD53 pKa = 3.39LTQLHH58 pKa = 6.79LLAHH62 pKa = 6.69GAPGEE67 pKa = 3.96IRR69 pKa = 11.84LGEE72 pKa = 4.17RR73 pKa = 11.84ALTAADD79 pKa = 3.6FRR81 pKa = 11.84QYY83 pKa = 11.5LNGAAMRR90 pKa = 11.84DD91 pKa = 3.42LSINFWSCHH100 pKa = 4.94TGAGEE105 pKa = 3.87MGTEE109 pKa = 4.24FTHH112 pKa = 6.96AVAAATGARR121 pKa = 11.84VLAAEE126 pKa = 4.31GLIGAANKK134 pKa = 9.52QGSWEE139 pKa = 4.23LNGITAPFSEE149 pKa = 4.82TARR152 pKa = 11.84AGYY155 pKa = 11.06ANVLAVRR162 pKa = 11.84DD163 pKa = 3.86RR164 pKa = 11.84FEE166 pKa = 6.41DD167 pKa = 3.39NDD169 pKa = 3.98TAATATNLGTITSTRR184 pKa = 11.84TEE186 pKa = 3.99TGLSIEE192 pKa = 4.66TNDD195 pKa = 3.85PDD197 pKa = 3.39WFQFTLGSTGTSASNVAIDD216 pKa = 3.96FSNALGDD223 pKa = 4.36LDD225 pKa = 4.21IFLYY229 pKa = 10.76DD230 pKa = 3.32AAGNALQGTYY240 pKa = 10.42GSNDD244 pKa = 3.22HH245 pKa = 6.04EE246 pKa = 4.61QISLSGLAAGSYY258 pKa = 9.66LIKK261 pKa = 10.85VRR263 pKa = 11.84DD264 pKa = 3.6WTSLDD269 pKa = 3.22GGEE272 pKa = 4.28NPNYY276 pKa = 9.45TLTLIGSGEE285 pKa = 4.03VSPTVSYY292 pKa = 7.64PTLDD296 pKa = 3.51YY297 pKa = 10.98MPDD300 pKa = 3.37LTSSQMSGARR310 pKa = 11.84SLTFAPYY317 pKa = 10.25TSTSWDD323 pKa = 3.59SKK325 pKa = 9.78AGAYY329 pKa = 10.06GSEE332 pKa = 4.46SGASSHH338 pKa = 7.05SIYY341 pKa = 10.43TITATAGQVYY351 pKa = 10.44DD352 pKa = 5.02LYY354 pKa = 11.03SVSYY358 pKa = 9.78FDD360 pKa = 4.79PYY362 pKa = 11.5SLTVYY367 pKa = 10.59DD368 pKa = 4.15SLGNAIVTNAEE379 pKa = 3.69SDD381 pKa = 3.82DD382 pKa = 3.94PADD385 pKa = 3.8YY386 pKa = 11.43NLGDD390 pKa = 3.77AYY392 pKa = 11.47YY393 pKa = 10.88GVDD396 pKa = 3.93WLNDD400 pKa = 2.87WTAPYY405 pKa = 10.47SGTYY409 pKa = 9.58YY410 pKa = 10.93VDD412 pKa = 4.35ASWHH416 pKa = 5.08QGSYY420 pKa = 7.75FTFYY424 pKa = 11.62DD425 pKa = 3.9LMIYY429 pKa = 9.93KK430 pKa = 10.29NKK432 pKa = 9.06STTVLPTLSLSSLSPSSVSEE452 pKa = 4.22GNSGSTSMMVNVTRR466 pKa = 11.84TGDD469 pKa = 3.45LSSTSSASWSVVGAAATASDD489 pKa = 4.27FLSGVLPTGTVNFAAGQASATATINIAGDD518 pKa = 3.46TTIEE522 pKa = 3.84SDD524 pKa = 3.76EE525 pKa = 4.39NFTVTLSNPVSATLDD540 pKa = 3.16ISSATGTIVNDD551 pKa = 3.98DD552 pKa = 3.61VSPPVPYY559 pKa = 8.19PTLDD563 pKa = 3.75YY564 pKa = 11.1IPDD567 pKa = 3.97LKK569 pKa = 10.8SSQMYY574 pKa = 9.81EE575 pKa = 3.75ADD577 pKa = 4.08LLAFLPVTSSVYY589 pKa = 10.47YY590 pKa = 10.92DD591 pKa = 3.43MEE593 pKa = 6.61AYY595 pKa = 10.15DD596 pKa = 4.9YY597 pKa = 11.29GLTSNASLHH606 pKa = 6.44SLYY609 pKa = 10.62QFNATTGVLYY619 pKa = 10.32DD620 pKa = 4.35IYY622 pKa = 10.65SISYY626 pKa = 10.41LDD628 pKa = 3.63PTEE631 pKa = 3.93LTIYY635 pKa = 10.41DD636 pKa = 3.6QFGNAIAINNEE647 pKa = 3.52SDD649 pKa = 4.64DD650 pKa = 4.42PDD652 pKa = 3.7NSTLSWVDD660 pKa = 3.36DD661 pKa = 3.99GGSYY665 pKa = 10.79SFDD668 pKa = 5.43AIWEE672 pKa = 3.95WSAPYY677 pKa = 10.47SGTFYY682 pKa = 11.24VDD684 pKa = 3.34SGWNQGSFFTYY695 pKa = 9.14WDD697 pKa = 3.25VSVYY701 pKa = 10.25RR702 pKa = 11.84NKK704 pKa = 9.91STTPSLPTLSLSSLTPTSISEE725 pKa = 4.32GNSGYY730 pKa = 9.0TPITFTVNRR739 pKa = 11.84DD740 pKa = 2.9GDD742 pKa = 3.73LSGTSRR748 pKa = 11.84VFFAVTGTGTNPVNAADD765 pKa = 4.08FRR767 pKa = 11.84DD768 pKa = 4.06GVLPSDD774 pKa = 4.47WIDD777 pKa = 3.57FDD779 pKa = 4.13SGAVSATITSYY790 pKa = 11.3VVAGDD795 pKa = 3.59TTPEE799 pKa = 3.95PNEE802 pKa = 4.03NFTVTLSSPTGATLGTSTSVIGTITNDD829 pKa = 3.6DD830 pKa = 4.35SLPLPTISLSPLSPSIITEE849 pKa = 3.91GHH851 pKa = 5.52SGYY854 pKa = 8.97TPVNIVVTRR863 pKa = 11.84GGDD866 pKa = 3.41LSSTSSATWTVVGTGVAPVTADD888 pKa = 3.45DD889 pKa = 4.54FGGFLPSGIISLAAGVATATVSINILGDD917 pKa = 3.39TTVEE921 pKa = 4.18SNEE924 pKa = 4.54DD925 pKa = 3.49FTVMLSNPSGATLIPNTVTGTITNDD950 pKa = 3.32DD951 pKa = 4.28VILPTLSLASLTPSIIMEE969 pKa = 4.48GNSGFTPMTVTITRR983 pKa = 11.84SGDD986 pKa = 3.4LSGTSAANWSVIGAGATADD1005 pKa = 3.81DD1006 pKa = 4.95FIGGVLPSGTISFPAWQATTTATINIFGDD1035 pKa = 3.62TLVEE1039 pKa = 4.38SNEE1042 pKa = 3.95NFSVVLAAPVGATLGTSTSAMGTINNDD1069 pKa = 3.1DD1070 pKa = 4.1TLPTINVAPVYY1081 pKa = 10.55AITEE1085 pKa = 4.44GNSGSTTVNVTVNRR1099 pKa = 11.84TGDD1102 pKa = 3.34LSTASSANWSVAGSGTTPAIGADD1125 pKa = 3.59FTGGVLPTGTVNFAAGIATASIAINVAGDD1154 pKa = 3.59TVFEE1158 pKa = 4.22QNEE1161 pKa = 4.22NFTVSLNTPVNATLGASVNTTGTINNDD1188 pKa = 2.92DD1189 pKa = 4.27TLPVLNVAPVLAITEE1204 pKa = 4.43GNSGSTAVNITVNRR1218 pKa = 11.84TGDD1221 pKa = 3.44LSTASSTNWSVAGSGTNPVIGADD1244 pKa = 3.57FTGGVLPTGTVNFAAGVATATIAINVAGDD1273 pKa = 3.43TTFEE1277 pKa = 4.44PNEE1280 pKa = 4.32DD1281 pKa = 3.49FTVSLNTPVNATLDD1295 pKa = 3.54ASVNTTGTINNDD1307 pKa = 2.92DD1308 pKa = 4.27TLPVLNVAPVLAITEE1323 pKa = 4.43GNSGSTAVNVTVNRR1337 pKa = 11.84TGDD1340 pKa = 3.34LSTASSANWSVAGSGTNPVIGADD1363 pKa = 3.62FMGGVLPMGTVNFAAGLATATIAINVAGDD1392 pKa = 3.43TTFEE1396 pKa = 4.44PNEE1399 pKa = 4.32DD1400 pKa = 3.49FTVSLNTPVNATLDD1414 pKa = 3.54ASVNTTGTINNDD1426 pKa = 2.92DD1427 pKa = 4.27TLPVLNVAPVLAITEE1442 pKa = 4.43GNSGSTAVNVTVNRR1456 pKa = 11.84TGDD1459 pKa = 3.34LSTASSANWSVAGSGTNPAIGADD1482 pKa = 3.7FTGGVLPTGMVNFAAGIATASIAINVAGDD1511 pKa = 3.59TVFEE1515 pKa = 4.22QNEE1518 pKa = 4.22NFTVSLNTPVNATLGSSVNTTGTINNDD1545 pKa = 2.92DD1546 pKa = 4.27TLPVLNVAPVLAITEE1561 pKa = 4.43GNSGSTAVNITVNRR1575 pKa = 11.84TGDD1578 pKa = 3.36LSTASSANWSVAGSGTNPVIGADD1601 pKa = 3.57FTGGVLPTGTVNFAAGVATATIAINVAGDD1630 pKa = 3.43TLFEE1634 pKa = 4.32QNEE1637 pKa = 4.25NFTVSLNTPVNATLGTSTSAMGTINNDD1664 pKa = 2.95DD1665 pKa = 4.23SIAIVGTSNNDD1676 pKa = 3.34RR1677 pKa = 11.84LKK1679 pKa = 10.71GTIKK1683 pKa = 10.4SDD1685 pKa = 3.58QLDD1688 pKa = 3.75GLAGDD1693 pKa = 5.21DD1694 pKa = 3.9YY1695 pKa = 11.65FFGLGGNDD1703 pKa = 3.66TLNGGAGNDD1712 pKa = 3.59TMRR1715 pKa = 11.84GGTGLDD1721 pKa = 3.49SMIGGDD1727 pKa = 4.77GNDD1730 pKa = 3.19LYY1732 pKa = 11.37YY1733 pKa = 10.65VEE1735 pKa = 5.42EE1736 pKa = 5.26IGDD1739 pKa = 3.88IVVEE1743 pKa = 4.27TATGGIDD1750 pKa = 3.45TVNSSLNNYY1759 pKa = 7.0MLNAAVEE1766 pKa = 4.26NGRR1769 pKa = 11.84ISIPGTASITGNDD1782 pKa = 3.67LDD1784 pKa = 4.91NILFAGVGNNTIDD1797 pKa = 3.7GGTGTDD1803 pKa = 3.15TVVYY1807 pKa = 9.77SALKK1811 pKa = 8.87TSVGSTLGVKK1821 pKa = 9.92VNLMNTAIQITGSSGSDD1838 pKa = 2.99LLLSIEE1844 pKa = 4.53NLTGSNKK1851 pKa = 9.84NDD1853 pKa = 3.56TLGGNSAANVLNGGLGNDD1871 pKa = 3.76ILTGGAGKK1879 pKa = 10.23DD1880 pKa = 3.11VFVFDD1885 pKa = 3.5TALNRR1890 pKa = 11.84NVDD1893 pKa = 3.74QIKK1896 pKa = 10.67DD1897 pKa = 3.58FSVVDD1902 pKa = 3.58DD1903 pKa = 4.92TIQLEE1908 pKa = 4.17NSVFKK1913 pKa = 10.78QLSSTGSLKK1922 pKa = 10.76ASYY1925 pKa = 9.44FVKK1928 pKa = 9.85NTTGKK1933 pKa = 10.79ANDD1936 pKa = 3.59TDD1938 pKa = 4.54DD1939 pKa = 5.21FIIYY1943 pKa = 8.16DD1944 pKa = 3.98TDD1946 pKa = 3.63SGALFYY1952 pKa = 11.19DD1953 pKa = 3.96ADD1955 pKa = 4.01GSGAGAAVQFAIVSIGVVLTAADD1978 pKa = 4.96FIVSS1982 pKa = 3.71

Molecular weight: 203.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S7XQK1|A0A2S7XQK1_9GAMM 50S ribosomal protein L14 OS=Chromatium okenii OX=61644 GN=rplN PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.56RR3 pKa = 11.84TFQPSRR9 pKa = 11.84LKK11 pKa = 10.48RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.93GFRR19 pKa = 11.84ARR21 pKa = 11.84SATRR25 pKa = 11.84NGLKK29 pKa = 10.3VLSARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.29GRR39 pKa = 11.84ARR41 pKa = 11.84LSPVV45 pKa = 2.69

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2811

0

2811

814741

27

2927

289.8

31.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.737 ± 0.068

1.148 ± 0.027

5.518 ± 0.039

5.656 ± 0.05

3.767 ± 0.036

6.88 ± 0.06

2.311 ± 0.028

5.922 ± 0.04

3.571 ± 0.045

10.952 ± 0.077

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.22 ± 0.027

3.856 ± 0.056

4.67 ± 0.051

4.471 ± 0.044

6.261 ± 0.065

5.505 ± 0.054

6.073 ± 0.087

6.686 ± 0.044

1.316 ± 0.022

2.479 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski