Psychroserpens burtonensis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Psychroserpens

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3458 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C7B7S8|A0A5C7B7S8_9FLAO Sigma-70 family RNA polymerase sigma factor OS=Psychroserpens burtonensis OX=49278 GN=ES692_14790 PE=3 SV=1
MM1 pKa = 7.66KK2 pKa = 10.49NLIYY6 pKa = 10.31IIAILLTVGMFQSCSDD22 pKa = 4.13DD23 pKa = 4.23DD24 pKa = 4.88FPVPPASTVPEE35 pKa = 4.02FAFVIDD41 pKa = 3.8NDD43 pKa = 3.62EE44 pKa = 4.24FAPATVTFTNNSIVPGNVGTATYY67 pKa = 9.9YY68 pKa = 10.31WNFGDD73 pKa = 4.97GEE75 pKa = 4.6STSEE79 pKa = 3.98EE80 pKa = 4.26NPTYY84 pKa = 10.78LYY86 pKa = 9.99TEE88 pKa = 4.21SGAYY92 pKa = 8.01TVNLVVTTSEE102 pKa = 3.9SLEE105 pKa = 3.86INEE108 pKa = 3.85ITKK111 pKa = 9.22TVVIKK116 pKa = 10.64DD117 pKa = 3.66PNATGVPIYY126 pKa = 9.34FTDD129 pKa = 4.62GAQVYY134 pKa = 9.85QGLINTQAPIFTTVNGVVAQSSYY157 pKa = 11.54GMVIDD162 pKa = 4.09NVNSKK167 pKa = 10.86LYY169 pKa = 10.35ISDD172 pKa = 3.62YY173 pKa = 10.96GADD176 pKa = 3.3KK177 pKa = 10.41IYY179 pKa = 10.65RR180 pKa = 11.84SNLDD184 pKa = 2.95GSNFEE189 pKa = 4.16EE190 pKa = 4.73FRR192 pKa = 11.84TGVDD196 pKa = 3.24QPNGMTIDD204 pKa = 3.66YY205 pKa = 10.0EE206 pKa = 4.28EE207 pKa = 4.14NQIYY211 pKa = 9.86WDD213 pKa = 3.86TSSGIQRR220 pKa = 11.84GNIDD224 pKa = 3.89DD225 pKa = 3.98TDD227 pKa = 3.83VNQVEE232 pKa = 4.79DD233 pKa = 4.32FVTGQSNDD241 pKa = 3.52PDD243 pKa = 4.12GLSIDD248 pKa = 3.72LVNRR252 pKa = 11.84KK253 pKa = 9.55LYY255 pKa = 7.87WVNYY259 pKa = 9.37NGGVWVKK266 pKa = 10.6NLDD269 pKa = 3.65GTGEE273 pKa = 4.15SEE275 pKa = 5.04LIPVIEE281 pKa = 4.75GGSMLVIGDD290 pKa = 4.3RR291 pKa = 11.84IFYY294 pKa = 10.41DD295 pKa = 3.78EE296 pKa = 4.53YY297 pKa = 11.0VASGDD302 pKa = 3.72VRR304 pKa = 11.84LKK306 pKa = 10.96SADD309 pKa = 3.71LDD311 pKa = 3.72GTNISTIAVNIGRR324 pKa = 11.84VVYY327 pKa = 10.28GIGYY331 pKa = 8.29DD332 pKa = 3.4ANEE335 pKa = 3.95NKK337 pKa = 10.01IYY339 pKa = 10.15WGDD342 pKa = 3.52RR343 pKa = 11.84STDD346 pKa = 2.83VMMRR350 pKa = 11.84ANLDD354 pKa = 3.46GSSPEE359 pKa = 3.43AWFTHH364 pKa = 5.82SADD367 pKa = 3.06TRR369 pKa = 11.84GIVIGEE375 pKa = 4.22LEE377 pKa = 3.88

Molecular weight: 41.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C7BE50|A0A5C7BE50_9FLAO Uncharacterized protein OS=Psychroserpens burtonensis OX=49278 GN=ES692_09620 PE=4 SV=1
MM1 pKa = 8.0PKK3 pKa = 9.06RR4 pKa = 11.84TFQPSKK10 pKa = 9.13RR11 pKa = 11.84KK12 pKa = 9.48RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 9.49HH17 pKa = 3.94GFRR20 pKa = 11.84EE21 pKa = 4.18RR22 pKa = 11.84MASVNGRR29 pKa = 11.84KK30 pKa = 9.21VLARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.09GRR40 pKa = 11.84KK41 pKa = 7.97KK42 pKa = 10.62LSVSSEE48 pKa = 4.04TRR50 pKa = 11.84HH51 pKa = 5.93KK52 pKa = 10.8RR53 pKa = 3.27

Molecular weight: 6.39 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3458

0

3458

1151945

22

2740

333.1

37.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.119 ± 0.043

0.773 ± 0.016

5.985 ± 0.039

6.314 ± 0.041

5.27 ± 0.041

6.233 ± 0.045

1.752 ± 0.023

8.289 ± 0.039

7.53 ± 0.065

9.249 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.131 ± 0.021

6.394 ± 0.045

3.172 ± 0.02

3.375 ± 0.023

3.301 ± 0.029

6.76 ± 0.033

6.205 ± 0.053

6.138 ± 0.034

0.99 ± 0.015

4.018 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski