Sida golden yellow vein virus-[A11]

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Sida golden yellow vein virus

Average proteome isoelectric point is 7.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9YNW3|Q9YNW3_9GEMI Capsid protein OS=Sida golden yellow vein virus-[A11] OX=223318 GN=AR1 PE=3 SV=1
MM1 pKa = 7.45IVNLPEE7 pKa = 5.37SPDD10 pKa = 3.39QSLLVAGILTPSDD23 pKa = 3.45FTIEE27 pKa = 4.04PVHH30 pKa = 6.62NLITITEE37 pKa = 4.09IVLNRR42 pKa = 11.84GGARR46 pKa = 11.84LVVIHH51 pKa = 6.24VKK53 pKa = 10.41HH54 pKa = 5.8LAKK57 pKa = 10.58VHH59 pKa = 5.92WSAIGSTIPDD69 pKa = 3.5QPEE72 pKa = 4.34HH73 pKa = 5.05YY74 pKa = 8.47TVRR77 pKa = 11.84VVLEE81 pKa = 4.49LDD83 pKa = 3.81VLIHH87 pKa = 6.74PNLPP91 pKa = 3.52

Molecular weight: 10.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9YNW3|Q9YNW3_9GEMI Capsid protein OS=Sida golden yellow vein virus-[A11] OX=223318 GN=AR1 PE=3 SV=1
MM1 pKa = 7.52TKK3 pKa = 9.87RR4 pKa = 11.84DD5 pKa = 3.7SSWRR9 pKa = 11.84SMAGTTKK16 pKa = 9.91VRR18 pKa = 11.84RR19 pKa = 11.84TLNFSPRR26 pKa = 11.84GGGGPKK32 pKa = 7.64QTRR35 pKa = 11.84ASEE38 pKa = 4.1WVNRR42 pKa = 11.84PMYY45 pKa = 9.91RR46 pKa = 11.84KK47 pKa = 8.86PLIYY51 pKa = 9.17RR52 pKa = 11.84TLRR55 pKa = 11.84TPDD58 pKa = 3.21VPRR61 pKa = 11.84GCEE64 pKa = 4.34GPCKK68 pKa = 9.32VQSYY72 pKa = 6.94EE73 pKa = 3.74QRR75 pKa = 11.84HH76 pKa = 6.38DD77 pKa = 3.16ISHH80 pKa = 6.13VGKK83 pKa = 10.55VMCISDD89 pKa = 3.56VTRR92 pKa = 11.84GNGITHH98 pKa = 6.78RR99 pKa = 11.84VGKK102 pKa = 9.44RR103 pKa = 11.84FCVKK107 pKa = 10.05SVYY110 pKa = 9.82TLGKK114 pKa = 9.18IWMDD118 pKa = 3.36EE119 pKa = 4.0NIKK122 pKa = 10.61LKK124 pKa = 10.73NHH126 pKa = 5.95TNSVMFWLVRR136 pKa = 11.84DD137 pKa = 3.7RR138 pKa = 11.84RR139 pKa = 11.84PYY141 pKa = 8.05GTPMDD146 pKa = 4.6FGQVFNMYY154 pKa = 10.66DD155 pKa = 3.86NEE157 pKa = 4.36PSTATIKK164 pKa = 10.89NDD166 pKa = 3.0LRR168 pKa = 11.84DD169 pKa = 3.83RR170 pKa = 11.84YY171 pKa = 10.16QVMHH175 pKa = 6.95RR176 pKa = 11.84FYY178 pKa = 11.43GKK180 pKa = 8.6VTGGQYY186 pKa = 11.1ASNEE190 pKa = 3.84QALVRR195 pKa = 11.84RR196 pKa = 11.84FWKK199 pKa = 10.36INNHH203 pKa = 4.29VVYY206 pKa = 10.5NHH208 pKa = 5.8QEE210 pKa = 3.47AGKK213 pKa = 10.41YY214 pKa = 8.39EE215 pKa = 4.09NHH217 pKa = 6.52TEE219 pKa = 3.99NALLLYY225 pKa = 7.29MACTHH230 pKa = 7.07ASNPVYY236 pKa = 9.86ATLKK240 pKa = 9.47IRR242 pKa = 11.84IYY244 pKa = 10.59FYY246 pKa = 11.38DD247 pKa = 4.2SITNN251 pKa = 3.6

Molecular weight: 29.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1048

85

360

174.7

19.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.725 ± 0.916

1.622 ± 0.376

4.771 ± 0.657

5.439 ± 0.724

3.435 ± 0.575

5.821 ± 0.521

4.008 ± 0.514

6.202 ± 0.759

5.534 ± 1.078

7.729 ± 0.802

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.29 ± 0.566

5.725 ± 0.787

5.63 ± 0.864

4.198 ± 0.632

6.87 ± 1.447

7.729 ± 1.122

5.439 ± 0.865

6.011 ± 1.133

1.813 ± 0.09

4.008 ± 0.745
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski