Echinostoma caproni

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Spiralia; Lophotrochozoa; Platyhelminthes; Trematoda; Digenea; Plagiorchiida; Echinostomata; Echinostomatoidea; Echinostomatidae; Echinostoma

Average proteome isoelectric point is 6.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 18535 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A183A8R5|A0A183A8R5_9TREM Uncharacterized protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS3350 PE=4 SV=1
MM1 pKa = 7.53WIEE4 pKa = 4.28SGPLRR9 pKa = 11.84CVRR12 pKa = 11.84KK13 pKa = 9.94HH14 pKa = 5.23EE15 pKa = 4.6CSTPGCTIMNHH26 pKa = 5.25ATGQVVRR33 pKa = 11.84WCCVDD38 pKa = 3.43VVIVDD43 pKa = 3.37VDD45 pKa = 4.0VVVVNVVVGVDD56 pKa = 3.56VVVGGVDD63 pKa = 3.45AVVVGADD70 pKa = 3.52VVLLGVDD77 pKa = 3.66VVVVGGVFVVGVDD90 pKa = 3.66VVVVDD95 pKa = 4.4ADD97 pKa = 4.01VVLLGVDD104 pKa = 3.44VVVVVVVVVVVNVVVVDD121 pKa = 4.02VVGVDD126 pKa = 3.16VFVVVVGVVVGVVVVVGGGGGGG148 pKa = 3.18

Molecular weight: 14.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A183A329|A0A183A329_9TREM Uncharacterized protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS1364 PE=4 SV=1
MM1 pKa = 7.18MMRR4 pKa = 11.84MITRR8 pKa = 11.84SLMRR12 pKa = 11.84MMKK15 pKa = 10.17RR16 pKa = 11.84MMMRR20 pKa = 11.84MRR22 pKa = 11.84MMMRR26 pKa = 11.84MMLRR30 pKa = 11.84MMMKK34 pKa = 9.94IMTRR38 pKa = 11.84TLMRR42 pKa = 11.84MMMMMTMMMRR52 pKa = 11.84MMMWTMMRR60 pKa = 11.84MLMRR64 pKa = 11.84IMMRR68 pKa = 11.84MMMRR72 pKa = 11.84IMMWIMLSQCMRR84 pKa = 11.84RR85 pKa = 11.84MMSMMMRR92 pKa = 11.84MMMRR96 pKa = 11.84MRR98 pKa = 11.84MILMMRR104 pKa = 11.84TMMRR108 pKa = 11.84MMTRR112 pKa = 11.84MMLGMMMRR120 pKa = 11.84MIMRR124 pKa = 11.84TMMRR128 pKa = 11.84LMMRR132 pKa = 11.84II133 pKa = 3.57

Molecular weight: 17.48 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

18535

0

18535

5728309

29

7209

309.1

34.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.82 ± 0.02

1.945 ± 0.011

6.687 ± 0.109

5.757 ± 0.025

3.464 ± 0.012

5.54 ± 0.026

2.713 ± 0.011

4.626 ± 0.014

4.168 ± 0.017

9.419 ± 0.03

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.749 ± 0.041

4.113 ± 0.013

5.9 ± 0.027

4.264 ± 0.018

6.366 ± 0.019

9.04 ± 0.028

6.359 ± 0.021

6.3 ± 0.015

1.116 ± 0.007

2.584 ± 0.01
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski