Capybara microvirus Cap3_SP_469

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W8P9|A0A4P8W8P9_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_469 OX=2585464 PE=4 SV=1
MM1 pKa = 7.37SKK3 pKa = 10.61KK4 pKa = 10.41KK5 pKa = 10.42VVNDD9 pKa = 3.64LSYY12 pKa = 10.3HH13 pKa = 4.53YY14 pKa = 10.38HH15 pKa = 6.64VNTCDD20 pKa = 3.16EE21 pKa = 5.08GINEE25 pKa = 4.24VKK27 pKa = 10.43CACKK31 pKa = 10.21LYY33 pKa = 11.14NEE35 pKa = 4.53GKK37 pKa = 8.5YY38 pKa = 8.39TFEE41 pKa = 4.05EE42 pKa = 5.06LILFLNTIKK51 pKa = 9.37TQIDD55 pKa = 3.98DD56 pKa = 4.86DD57 pKa = 5.23LDD59 pKa = 4.15DD60 pKa = 6.18LILEE64 pKa = 4.52VICDD68 pKa = 4.19RR69 pKa = 11.84IEE71 pKa = 4.38KK72 pKa = 10.17IEE74 pKa = 4.25SEE76 pKa = 4.65VYY78 pKa = 10.73KK79 pKa = 11.1NN80 pKa = 3.27

Molecular weight: 9.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W549|A0A4P8W549_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_469 OX=2585464 PE=3 SV=1
MM1 pKa = 7.14CTSPLKK7 pKa = 10.52GFPYY11 pKa = 10.83GKK13 pKa = 8.58TKK15 pKa = 10.58NGKK18 pKa = 9.25DD19 pKa = 3.17NFVITSYY26 pKa = 10.89KK27 pKa = 9.68CDD29 pKa = 3.95HH30 pKa = 6.83IEE32 pKa = 3.92VNRR35 pKa = 11.84NDD37 pKa = 3.81VPIKK41 pKa = 10.1IYY43 pKa = 10.58EE44 pKa = 3.92PTFIHH49 pKa = 6.62SQDD52 pKa = 3.16TKK54 pKa = 11.02EE55 pKa = 4.24IIRR58 pKa = 11.84DD59 pKa = 4.41FIEE62 pKa = 4.66IPCGHH67 pKa = 6.86CLEE70 pKa = 4.91CRR72 pKa = 11.84LDD74 pKa = 4.59YY75 pKa = 10.96SRR77 pKa = 11.84QWANRR82 pKa = 11.84CMLEE86 pKa = 4.07AQSYY90 pKa = 7.16KK91 pKa = 10.52HH92 pKa = 6.32NYY94 pKa = 8.68FVTLTYY100 pKa = 11.11DD101 pKa = 4.05DD102 pKa = 4.4LHH104 pKa = 8.53LPMNEE109 pKa = 3.96YY110 pKa = 10.92VDD112 pKa = 3.7VDD114 pKa = 3.77GVLQLSPTLVKK125 pKa = 10.28RR126 pKa = 11.84DD127 pKa = 3.43LQLFMKK133 pKa = 10.54RR134 pKa = 11.84LRR136 pKa = 11.84KK137 pKa = 9.97KK138 pKa = 10.27FGDD141 pKa = 3.44NIRR144 pKa = 11.84FYY146 pKa = 11.58ACGEE150 pKa = 4.29YY151 pKa = 10.59GSKK154 pKa = 7.16THH156 pKa = 6.81RR157 pKa = 11.84PHH159 pKa = 5.64YY160 pKa = 10.36HH161 pKa = 6.98LILFNFNPNDD171 pKa = 5.11LIFLKK176 pKa = 10.91QNFQGDD182 pKa = 4.44LYY184 pKa = 8.88YY185 pKa = 10.47TSPGLEE191 pKa = 4.18SCWKK195 pKa = 9.83YY196 pKa = 10.38GYY198 pKa = 11.62SMIAEE203 pKa = 4.53VNWNTCAYY211 pKa = 7.52VARR214 pKa = 11.84YY215 pKa = 8.62IVKK218 pKa = 10.03KK219 pKa = 10.64QFGEE223 pKa = 3.81NADD226 pKa = 3.63YY227 pKa = 11.25KK228 pKa = 10.66KK229 pKa = 10.87FNYY232 pKa = 9.77EE233 pKa = 3.81PEE235 pKa = 4.12FTLMSRR241 pKa = 11.84KK242 pKa = 9.57PGIARR247 pKa = 11.84DD248 pKa = 3.23WYY250 pKa = 10.29EE251 pKa = 3.63NHH253 pKa = 7.3KK254 pKa = 11.15DD255 pKa = 3.39NLYY258 pKa = 10.73DD259 pKa = 3.6YY260 pKa = 10.79DD261 pKa = 5.68AIYY264 pKa = 10.32IKK266 pKa = 10.67DD267 pKa = 4.61GIPVKK272 pKa = 9.93PSKK275 pKa = 11.1YY276 pKa = 9.74FDD278 pKa = 3.35RR279 pKa = 11.84LYY281 pKa = 10.86DD282 pKa = 3.38IDD284 pKa = 4.94YY285 pKa = 9.04SAQMEE290 pKa = 4.61EE291 pKa = 3.87IKK293 pKa = 10.52KK294 pKa = 10.0VRR296 pKa = 11.84LEE298 pKa = 4.1SMLHH302 pKa = 5.36HH303 pKa = 6.89KK304 pKa = 9.78MLIAEE309 pKa = 4.54MTSQTYY315 pKa = 9.9EE316 pKa = 4.05EE317 pKa = 4.23QLSTRR322 pKa = 11.84NNVIEE327 pKa = 4.46EE328 pKa = 4.14KK329 pKa = 9.98TKK331 pKa = 9.84KK332 pKa = 10.13LKK334 pKa = 10.55RR335 pKa = 11.84KK336 pKa = 9.45EE337 pKa = 3.68II338 pKa = 3.99

Molecular weight: 40.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1444

80

552

240.7

27.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.055 ± 1.099

1.316 ± 0.584

5.886 ± 0.785

5.748 ± 1.157

4.571 ± 0.572

7.064 ± 1.283

1.87 ± 0.487

5.886 ± 0.87

5.956 ± 1.637

7.964 ± 0.45

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.77 ± 0.6

8.102 ± 1.357

4.155 ± 0.802

3.463 ± 0.393

3.67 ± 0.709

8.657 ± 1.706

5.471 ± 0.264

5.956 ± 0.6

1.108 ± 0.248

5.332 ± 0.784
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski