Planktothrix agardhii (Oscillatoria agardhii)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Cyanobacteria/Melainabacteria group; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleaceae; Planktothrix

Average proteome isoelectric point is 6.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 147 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1J1JMR7|A0A1J1JMR7_PLAAG TNase-like domain-containing protein OS=Planktothrix agardhii OX=1160 GN=PLAM_mp0046 PE=4 SV=1
MM1 pKa = 7.71NEE3 pKa = 5.35LNGQWLEE10 pKa = 4.38CGGKK14 pKa = 9.18PCFCPDD20 pKa = 3.85NSPSPYY26 pKa = 10.42DD27 pKa = 3.92YY28 pKa = 11.36LWDD31 pKa = 5.11DD32 pKa = 4.85DD33 pKa = 4.6IEE35 pKa = 6.13DD36 pKa = 3.55IEE38 pKa = 4.42EE39 pKa = 4.03NKK41 pKa = 10.43EE42 pKa = 3.94VIEE45 pKa = 4.29FRR47 pKa = 11.84EE48 pKa = 4.09KK49 pKa = 10.59CKK51 pKa = 10.75LISRR55 pKa = 11.84YY56 pKa = 9.94SSLIEE61 pKa = 4.41PFDD64 pKa = 3.87SAQEE68 pKa = 4.03SPIEE72 pKa = 4.32FEE74 pKa = 4.09IEE76 pKa = 4.02SNSRR80 pKa = 11.84YY81 pKa = 10.54DD82 pKa = 3.46EE83 pKa = 4.22FF84 pKa = 6.55

Molecular weight: 9.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1J1JL52|A0A1J1JL52_PLAAG Uncharacterized protein OS=Planktothrix agardhii OX=1160 GN=PLAM_mp0009 PE=4 SV=1
MM1 pKa = 7.73RR2 pKa = 11.84EE3 pKa = 3.42IFVFFFIRR11 pKa = 11.84WVLLTISDD19 pKa = 4.4LSFFYY24 pKa = 10.68HH25 pKa = 7.06KK26 pKa = 10.26SLHH29 pKa = 5.98SLYY32 pKa = 10.59CLVFSLVCRR41 pKa = 11.84PVSFISLVLLIAIAYY56 pKa = 9.58SSATIQGQQIKK67 pKa = 10.38RR68 pKa = 11.84KK69 pKa = 9.8GIQKK73 pKa = 9.68YY74 pKa = 7.72IARR77 pKa = 11.84IKK79 pKa = 9.98EE80 pKa = 3.65YY81 pKa = 10.47GRR83 pKa = 11.84IEE85 pKa = 3.92RR86 pKa = 11.84RR87 pKa = 11.84HH88 pKa = 5.16SSFYY92 pKa = 10.3IGLYY96 pKa = 8.34GQTWVNFKK104 pKa = 10.02DD105 pKa = 3.38VCMDD109 pKa = 4.65LVTKK113 pKa = 10.52LMKK116 pKa = 10.66LNRR119 pKa = 11.84NKK121 pKa = 10.3CKK123 pKa = 10.45YY124 pKa = 7.96YY125 pKa = 9.95QQGLRR130 pKa = 11.84AMRR133 pKa = 11.84LIEE136 pKa = 4.35SVLL139 pKa = 3.53

Molecular weight: 16.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

147

0

147

44004

44

2995

299.3

33.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.531 ± 0.171

1.279 ± 0.075

5.3 ± 0.118

7.113 ± 0.149

3.877 ± 0.102

5.831 ± 0.19

2.095 ± 0.084

6.99 ± 0.187

5.849 ± 0.211

10.715 ± 0.19

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.773 ± 0.073

4.738 ± 0.127

4.734 ± 0.143

5.45 ± 0.181

5.031 ± 0.212

6.547 ± 0.132

5.259 ± 0.136

5.899 ± 0.135

1.559 ± 0.063

3.429 ± 0.11
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski