Synechococcus virus S-PRM1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Kanaloavirus; unclassified Kanaloavirus

Average proteome isoelectric point is 5.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 190 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A346FKD2|A0A346FKD2_9CAUD Uncharacterized protein OS=Synechococcus virus S-PRM1 OX=2100130 PE=4 SV=1
MM1 pKa = 7.42LAISLVFGALFAVGGTIVGFISGWFANEE29 pKa = 4.01KK30 pKa = 8.48YY31 pKa = 10.43SEE33 pKa = 4.16YY34 pKa = 11.25VEE36 pKa = 5.5LKK38 pKa = 7.75TAQIATHH45 pKa = 6.65PEE47 pKa = 3.9MYY49 pKa = 9.25DD50 pKa = 3.27TEE52 pKa = 4.92GNLITSQLTALRR64 pKa = 11.84VVLDD68 pKa = 4.46DD69 pKa = 3.51QDD71 pKa = 4.53FYY73 pKa = 11.97YY74 pKa = 10.92DD75 pKa = 5.49DD76 pKa = 4.13EE77 pKa = 4.75DD78 pKa = 3.64

Molecular weight: 8.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A346FKM1|A0A346FKM1_9CAUD Major capsid protein OS=Synechococcus virus S-PRM1 OX=2100130 PE=4 SV=1
MM1 pKa = 7.13KK2 pKa = 9.82TFNQFRR8 pKa = 11.84EE9 pKa = 4.25EE10 pKa = 4.58CGLEE14 pKa = 4.08EE15 pKa = 4.12NWLKK19 pKa = 11.2SLFGGSKK26 pKa = 9.82PAQTKK31 pKa = 9.23PPKK34 pKa = 9.59PANQNVLAYY43 pKa = 9.77KK44 pKa = 10.29NYY46 pKa = 10.03QPGVLDD52 pKa = 3.22KK53 pKa = 8.72TTNKK57 pKa = 7.49FTPRR61 pKa = 11.84SFTKK65 pKa = 10.42PEE67 pKa = 3.6QQRR70 pKa = 11.84YY71 pKa = 6.25GWKK74 pKa = 9.59PVNTSSYY81 pKa = 10.83GPGDD85 pKa = 3.73TTSQGYY91 pKa = 7.59NTGADD96 pKa = 3.09RR97 pKa = 11.84VQRR100 pKa = 11.84TADD103 pKa = 3.43GTPFTGSTRR112 pKa = 11.84GVAVPYY118 pKa = 9.8KK119 pKa = 10.01YY120 pKa = 10.14KK121 pKa = 10.91ANEE124 pKa = 4.09VPKK127 pKa = 9.22GTWAGTPSQDD137 pKa = 4.54FGTNLQFTQKK147 pKa = 10.76PMGTNTRR154 pKa = 11.84VTNATVRR161 pKa = 11.84DD162 pKa = 3.8TGNFGPAGEE171 pKa = 4.43VNRR174 pKa = 11.84NTSYY178 pKa = 11.88DD179 pKa = 3.52LMRR182 pKa = 11.84QTARR186 pKa = 11.84DD187 pKa = 3.53VTGNPNLTPTQYY199 pKa = 10.94GKK201 pKa = 10.44RR202 pKa = 11.84KK203 pKa = 9.53VYY205 pKa = 10.38VRR207 pKa = 11.84TAPRR211 pKa = 11.84RR212 pKa = 11.84SVTTEE217 pKa = 3.35RR218 pKa = 4.0

Molecular weight: 24.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

190

0

190

44622

54

2133

234.9

26.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.266 ± 0.212

1.038 ± 0.082

6.633 ± 0.129

6.752 ± 0.268

4.31 ± 0.122

7.505 ± 0.416

1.773 ± 0.106

6.174 ± 0.158

6.49 ± 0.332

7.496 ± 0.205

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.254 ± 0.154

5.504 ± 0.227

4.029 ± 0.144

3.628 ± 0.121

4.498 ± 0.153

6.414 ± 0.201

6.822 ± 0.494

6.925 ± 0.178

1.259 ± 0.11

4.229 ± 0.156
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski