Bartonella tamiae Th239

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella tamiae

Average proteome isoelectric point is 6.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1978 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|J0R7F7|J0R7F7_9RHIZ Uncharacterized protein OS=Bartonella tamiae Th239 OX=1094558 GN=ME5_00048 PE=4 SV=1
MM1 pKa = 7.7AYY3 pKa = 9.18IYY5 pKa = 10.74YY6 pKa = 10.17SIPLFNDD13 pKa = 2.73NGRR16 pKa = 11.84QISEE20 pKa = 4.24LDD22 pKa = 3.48GKK24 pKa = 10.73VEE26 pKa = 4.39FSVGLDD32 pKa = 3.05NGEE35 pKa = 4.01PFAEE39 pKa = 4.36IDD41 pKa = 4.64CIYY44 pKa = 11.16ADD46 pKa = 4.0DD47 pKa = 4.38FEE49 pKa = 5.59GFEE52 pKa = 4.12ICYY55 pKa = 9.93SANSDD60 pKa = 3.74TPFDD64 pKa = 3.51LTVFLRR70 pKa = 11.84AKK72 pKa = 10.08EE73 pKa = 3.89YY74 pKa = 11.19LEE76 pKa = 4.85QSDD79 pKa = 4.4AFQNEE84 pKa = 4.67AINEE88 pKa = 4.4DD89 pKa = 3.4GSFVYY94 pKa = 10.07EE95 pKa = 4.07GRR97 pKa = 11.84GSNDD101 pKa = 2.91PDD103 pKa = 3.9GYY105 pKa = 10.12FKK107 pKa = 10.77RR108 pKa = 11.84VAA110 pKa = 3.45

Molecular weight: 12.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|J1K0T5|J1K0T5_9RHIZ 30S ribosomal protein S18 OS=Bartonella tamiae Th239 OX=1094558 GN=rpsR PE=3 SV=1
MM1 pKa = 7.2QVNLKK6 pKa = 10.31RR7 pKa = 11.84KK8 pKa = 7.92AQEE11 pKa = 3.69RR12 pKa = 11.84QSFVTIIVVRR22 pKa = 11.84RR23 pKa = 11.84RR24 pKa = 11.84MGQRR28 pKa = 11.84SQGILAIGQNRR39 pKa = 11.84FICALGASGIVSQKK53 pKa = 10.57YY54 pKa = 9.45EE55 pKa = 4.23GDD57 pKa = 3.45GATPRR62 pKa = 11.84GVMKK66 pKa = 10.39VLQGFRR72 pKa = 11.84QKK74 pKa = 10.58NVHH77 pKa = 6.21SRR79 pKa = 11.84TKK81 pKa = 9.49HH82 pKa = 4.91CLKK85 pKa = 9.96MRR87 pKa = 11.84IIGNRR92 pKa = 11.84DD93 pKa = 2.76GWCDD97 pKa = 3.73EE98 pKa = 4.12NWDD101 pKa = 3.73ANYY104 pKa = 10.18NRR106 pKa = 11.84PVRR109 pKa = 11.84LPYY112 pKa = 9.9RR113 pKa = 11.84ASAEE117 pKa = 3.74EE118 pKa = 3.99MQRR121 pKa = 11.84KK122 pKa = 9.82DD123 pKa = 3.66EE124 pKa = 4.48IYY126 pKa = 11.3DD127 pKa = 3.22MGLIVDD133 pKa = 3.88WNIQKK138 pKa = 10.52RR139 pKa = 11.84VMNRR143 pKa = 11.84GSAIFMHH150 pKa = 7.19LARR153 pKa = 11.84KK154 pKa = 9.96GYY156 pKa = 8.3TPTRR160 pKa = 11.84GCIALSRR167 pKa = 11.84RR168 pKa = 11.84DD169 pKa = 3.51MEE171 pKa = 4.36RR172 pKa = 11.84VFTVVSNKK180 pKa = 8.28TRR182 pKa = 11.84LLILGG187 pKa = 4.04

Molecular weight: 21.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1978

0

1978

619200

30

4052

313.0

34.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.719 ± 0.056

0.883 ± 0.018

5.794 ± 0.049

5.681 ± 0.056

4.422 ± 0.043

7.053 ± 0.071

2.423 ± 0.028

7.535 ± 0.047

5.741 ± 0.056

9.84 ± 0.066

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.605 ± 0.029

4.425 ± 0.058

4.004 ± 0.033

3.813 ± 0.037

5.234 ± 0.055

6.216 ± 0.047

5.351 ± 0.05

6.331 ± 0.046

1.121 ± 0.022

2.81 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski