Amino acid dipepetide frequency for Wenzhou picorna-like virus 24

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.259AlaAla: 3.259 ± 0.0
0.0AlaCys: 0.0 ± 0.0
2.444AlaAsp: 2.444 ± 0.0
2.851AlaGlu: 2.851 ± 0.0
2.444AlaPhe: 2.444 ± 0.0
2.851AlaGly: 2.851 ± 0.0
0.815AlaHis: 0.815 ± 0.0
4.888AlaIle: 4.888 ± 0.0
4.481AlaLys: 4.481 ± 0.0
4.481AlaLeu: 4.481 ± 0.0
0.407AlaMet: 0.407 ± 0.0
3.666AlaAsn: 3.666 ± 0.0
3.259AlaPro: 3.259 ± 0.0
2.037AlaGln: 2.037 ± 0.0
2.037AlaArg: 2.037 ± 0.0
4.888AlaSer: 4.888 ± 0.0
5.295AlaThr: 5.295 ± 0.0
4.481AlaVal: 4.481 ± 0.0
0.815AlaTrp: 0.815 ± 0.0
2.444AlaTyr: 2.444 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.222CysAla: 1.222 ± 0.0
1.222CysCys: 1.222 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.407CysPhe: 0.407 ± 0.0
2.037CysGly: 2.037 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.407CysIle: 0.407 ± 0.0
0.407CysLys: 0.407 ± 0.0
1.222CysLeu: 1.222 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
1.222CysPro: 1.222 ± 0.0
1.222CysGln: 1.222 ± 0.0
0.407CysArg: 0.407 ± 0.0
2.037CysSer: 2.037 ± 0.0
0.407CysThr: 0.407 ± 0.0
1.629CysVal: 1.629 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
4.073AspAla: 4.073 ± 0.0
0.407AspCys: 0.407 ± 0.0
4.888AspAsp: 4.888 ± 0.0
2.037AspGlu: 2.037 ± 0.0
3.259AspPhe: 3.259 ± 0.0
2.037AspGly: 2.037 ± 0.0
0.407AspHis: 0.407 ± 0.0
5.295AspIle: 5.295 ± 0.0
1.629AspLys: 1.629 ± 0.0
5.295AspLeu: 5.295 ± 0.0
4.073AspMet: 4.073 ± 0.0
2.851AspAsn: 2.851 ± 0.0
4.481AspPro: 4.481 ± 0.0
1.629AspGln: 1.629 ± 0.0
2.444AspArg: 2.444 ± 0.0
5.703AspSer: 5.703 ± 0.0
2.037AspThr: 2.037 ± 0.0
3.666AspVal: 3.666 ± 0.0
0.407AspTrp: 0.407 ± 0.0
1.629AspTyr: 1.629 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
3.259GluAla: 3.259 ± 0.0
0.407GluCys: 0.407 ± 0.0
4.073GluAsp: 4.073 ± 0.0
4.481GluGlu: 4.481 ± 0.0
4.888GluPhe: 4.888 ± 0.0
2.444GluGly: 2.444 ± 0.0
1.629GluHis: 1.629 ± 0.0
3.666GluIle: 3.666 ± 0.0
2.851GluLys: 2.851 ± 0.0
6.11GluLeu: 6.11 ± 0.0
0.815GluMet: 0.815 ± 0.0
3.259GluAsn: 3.259 ± 0.0
1.629GluPro: 1.629 ± 0.0
0.815GluGln: 0.815 ± 0.0
1.629GluArg: 1.629 ± 0.0
7.739GluSer: 7.739 ± 0.0
2.037GluThr: 2.037 ± 0.0
4.888GluVal: 4.888 ± 0.0
0.407GluTrp: 0.407 ± 0.0
2.037GluTyr: 2.037 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
3.666PheAla: 3.666 ± 0.0
0.815PheCys: 0.815 ± 0.0
2.851PheAsp: 2.851 ± 0.0
3.666PheGlu: 3.666 ± 0.0
2.444PhePhe: 2.444 ± 0.0
5.295PheGly: 5.295 ± 0.0
1.629PheHis: 1.629 ± 0.0
3.259PheIle: 3.259 ± 0.0
4.073PheLys: 4.073 ± 0.0
4.073PheLeu: 4.073 ± 0.0
1.629PheMet: 1.629 ± 0.0
2.037PheAsn: 2.037 ± 0.0
1.222PhePro: 1.222 ± 0.0
0.815PheGln: 0.815 ± 0.0
5.295PheArg: 5.295 ± 0.0
5.703PheSer: 5.703 ± 0.0
3.666PheThr: 3.666 ± 0.0
5.295PheVal: 5.295 ± 0.0
0.407PheTrp: 0.407 ± 0.0
1.629PheTyr: 1.629 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.851GlyAla: 2.851 ± 0.0
1.629GlyCys: 1.629 ± 0.0
4.888GlyAsp: 4.888 ± 0.0
4.888GlyGlu: 4.888 ± 0.0
2.037GlyPhe: 2.037 ± 0.0
2.851GlyGly: 2.851 ± 0.0
2.037GlyHis: 2.037 ± 0.0
2.851GlyIle: 2.851 ± 0.0
3.666GlyLys: 3.666 ± 0.0
4.888GlyLeu: 4.888 ± 0.0
2.037GlyMet: 2.037 ± 0.0
2.851GlyAsn: 2.851 ± 0.0
0.815GlyPro: 0.815 ± 0.0
1.222GlyGln: 1.222 ± 0.0
1.629GlyArg: 1.629 ± 0.0
3.666GlySer: 3.666 ± 0.0
4.073GlyThr: 4.073 ± 0.0
4.888GlyVal: 4.888 ± 0.0
0.815GlyTrp: 0.815 ± 0.0
4.073GlyTyr: 4.073 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
2.444HisAla: 2.444 ± 0.0
0.407HisCys: 0.407 ± 0.0
1.222HisAsp: 1.222 ± 0.0
1.222HisGlu: 1.222 ± 0.0
2.444HisPhe: 2.444 ± 0.0
0.407HisGly: 0.407 ± 0.0
0.407HisHis: 0.407 ± 0.0
2.037HisIle: 2.037 ± 0.0
1.629HisLys: 1.629 ± 0.0
2.851HisLeu: 2.851 ± 0.0
0.407HisMet: 0.407 ± 0.0
1.222HisAsn: 1.222 ± 0.0
0.815HisPro: 0.815 ± 0.0
0.0HisGln: 0.0 ± 0.0
0.407HisArg: 0.407 ± 0.0
1.222HisSer: 1.222 ± 0.0
0.407HisThr: 0.407 ± 0.0
0.815HisVal: 0.815 ± 0.0
0.0HisTrp: 0.0 ± 0.0
0.407HisTyr: 0.407 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.073IleAla: 4.073 ± 0.0
0.815IleCys: 0.815 ± 0.0
5.295IleAsp: 5.295 ± 0.0
3.666IleGlu: 3.666 ± 0.0
4.888IlePhe: 4.888 ± 0.0
5.295IleGly: 5.295 ± 0.0
0.407IleHis: 0.407 ± 0.0
5.295IleIle: 5.295 ± 0.0
2.444IleLys: 2.444 ± 0.0
4.481IleLeu: 4.481 ± 0.0
1.222IleMet: 1.222 ± 0.0
3.259IleAsn: 3.259 ± 0.0
3.666IlePro: 3.666 ± 0.0
2.444IleGln: 2.444 ± 0.0
2.444IleArg: 2.444 ± 0.0
6.925IleSer: 6.925 ± 0.0
1.222IleThr: 1.222 ± 0.0
4.073IleVal: 4.073 ± 0.0
1.629IleTrp: 1.629 ± 0.0
2.851IleTyr: 2.851 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
4.888LysAla: 4.888 ± 0.0
0.815LysCys: 0.815 ± 0.0
4.888LysAsp: 4.888 ± 0.0
4.073LysGlu: 4.073 ± 0.0
2.037LysPhe: 2.037 ± 0.0
3.259LysGly: 3.259 ± 0.0
1.222LysHis: 1.222 ± 0.0
3.259LysIle: 3.259 ± 0.0
3.259LysLys: 3.259 ± 0.0
3.259LysLeu: 3.259 ± 0.0
0.407LysMet: 0.407 ± 0.0
2.037LysAsn: 2.037 ± 0.0
3.666LysPro: 3.666 ± 0.0
3.259LysGln: 3.259 ± 0.0
3.259LysArg: 3.259 ± 0.0
7.332LysSer: 7.332 ± 0.0
3.259LysThr: 3.259 ± 0.0
3.666LysVal: 3.666 ± 0.0
0.407LysTrp: 0.407 ± 0.0
0.407LysTyr: 0.407 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
2.444LeuAla: 2.444 ± 0.0
1.629LeuCys: 1.629 ± 0.0
5.295LeuAsp: 5.295 ± 0.0
5.295LeuGlu: 5.295 ± 0.0
4.888LeuPhe: 4.888 ± 0.0
3.259LeuGly: 3.259 ± 0.0
1.222LeuHis: 1.222 ± 0.0
2.444LeuIle: 2.444 ± 0.0
6.925LeuLys: 6.925 ± 0.0
8.554LeuLeu: 8.554 ± 0.0
3.259LeuMet: 3.259 ± 0.0
6.11LeuAsn: 6.11 ± 0.0
2.444LeuPro: 2.444 ± 0.0
2.444LeuGln: 2.444 ± 0.0
4.888LeuArg: 4.888 ± 0.0
7.739LeuSer: 7.739 ± 0.0
2.851LeuThr: 2.851 ± 0.0
4.073LeuVal: 4.073 ± 0.0
1.629LeuTrp: 1.629 ± 0.0
4.481LeuTyr: 4.481 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
1.222MetAla: 1.222 ± 0.0
0.407MetCys: 0.407 ± 0.0
0.815MetAsp: 0.815 ± 0.0
0.815MetGlu: 0.815 ± 0.0
1.629MetPhe: 1.629 ± 0.0
1.629MetGly: 1.629 ± 0.0
0.407MetHis: 0.407 ± 0.0
1.629MetIle: 1.629 ± 0.0
1.222MetLys: 1.222 ± 0.0
2.851MetLeu: 2.851 ± 0.0
0.407MetMet: 0.407 ± 0.0
2.037MetAsn: 2.037 ± 0.0
1.629MetPro: 1.629 ± 0.0
0.815MetGln: 0.815 ± 0.0
2.851MetArg: 2.851 ± 0.0
2.444MetSer: 2.444 ± 0.0
1.222MetThr: 1.222 ± 0.0
2.444MetVal: 2.444 ± 0.0
0.0MetTrp: 0.0 ± 0.0
1.222MetTyr: 1.222 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.666AsnAla: 3.666 ± 0.0
0.0AsnCys: 0.0 ± 0.0
2.444AsnAsp: 2.444 ± 0.0
2.037AsnGlu: 2.037 ± 0.0
4.073AsnPhe: 4.073 ± 0.0
6.11AsnGly: 6.11 ± 0.0
0.0AsnHis: 0.0 ± 0.0
2.444AsnIle: 2.444 ± 0.0
3.666AsnLys: 3.666 ± 0.0
4.888AsnLeu: 4.888 ± 0.0
3.259AsnMet: 3.259 ± 0.0
1.222AsnAsn: 1.222 ± 0.0
2.444AsnPro: 2.444 ± 0.0
1.222AsnGln: 1.222 ± 0.0
2.037AsnArg: 2.037 ± 0.0
3.666AsnSer: 3.666 ± 0.0
1.222AsnThr: 1.222 ± 0.0
2.444AsnVal: 2.444 ± 0.0
0.0AsnTrp: 0.0 ± 0.0
2.851AsnTyr: 2.851 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
1.222ProAla: 1.222 ± 0.0
1.222ProCys: 1.222 ± 0.0
1.629ProAsp: 1.629 ± 0.0
2.037ProGlu: 2.037 ± 0.0
6.11ProPhe: 6.11 ± 0.0
1.222ProGly: 1.222 ± 0.0
2.444ProHis: 2.444 ± 0.0
2.037ProIle: 2.037 ± 0.0
2.444ProLys: 2.444 ± 0.0
4.073ProLeu: 4.073 ± 0.0
0.0ProMet: 0.0 ± 0.0
2.444ProAsn: 2.444 ± 0.0
2.444ProPro: 2.444 ± 0.0
1.222ProGln: 1.222 ± 0.0
0.815ProArg: 0.815 ± 0.0
3.666ProSer: 3.666 ± 0.0
3.259ProThr: 3.259 ± 0.0
3.259ProVal: 3.259 ± 0.0
0.815ProTrp: 0.815 ± 0.0
3.259ProTyr: 3.259 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
1.629GlnAla: 1.629 ± 0.0
0.0GlnCys: 0.0 ± 0.0
1.222GlnAsp: 1.222 ± 0.0
4.073GlnGlu: 4.073 ± 0.0
0.815GlnPhe: 0.815 ± 0.0
0.407GlnGly: 0.407 ± 0.0
1.222GlnHis: 1.222 ± 0.0
1.629GlnIle: 1.629 ± 0.0
1.222GlnLys: 1.222 ± 0.0
1.629GlnLeu: 1.629 ± 0.0
1.222GlnMet: 1.222 ± 0.0
0.815GlnAsn: 0.815 ± 0.0
2.444GlnPro: 2.444 ± 0.0
0.407GlnGln: 0.407 ± 0.0
0.815GlnArg: 0.815 ± 0.0
2.851GlnSer: 2.851 ± 0.0
1.629GlnThr: 1.629 ± 0.0
2.444GlnVal: 2.444 ± 0.0
0.815GlnTrp: 0.815 ± 0.0
1.222GlnTyr: 1.222 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
1.629ArgAla: 1.629 ± 0.0
1.629ArgCys: 1.629 ± 0.0
3.259ArgAsp: 3.259 ± 0.0
2.037ArgGlu: 2.037 ± 0.0
4.481ArgPhe: 4.481 ± 0.0
3.666ArgGly: 3.666 ± 0.0
0.815ArgHis: 0.815 ± 0.0
4.073ArgIle: 4.073 ± 0.0
0.407ArgLys: 0.407 ± 0.0
2.851ArgLeu: 2.851 ± 0.0
1.222ArgMet: 1.222 ± 0.0
3.259ArgAsn: 3.259 ± 0.0
2.037ArgPro: 2.037 ± 0.0
0.0ArgGln: 0.0 ± 0.0
1.629ArgArg: 1.629 ± 0.0
2.444ArgSer: 2.444 ± 0.0
2.444ArgThr: 2.444 ± 0.0
3.259ArgVal: 3.259 ± 0.0
0.0ArgTrp: 0.0 ± 0.0
2.037ArgTyr: 2.037 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
5.295SerAla: 5.295 ± 0.0
0.407SerCys: 0.407 ± 0.0
6.11SerAsp: 6.11 ± 0.0
3.666SerGlu: 3.666 ± 0.0
5.295SerPhe: 5.295 ± 0.0
6.11SerGly: 6.11 ± 0.0
2.037SerHis: 2.037 ± 0.0
7.332SerIle: 7.332 ± 0.0
8.554SerLys: 8.554 ± 0.0
8.554SerLeu: 8.554 ± 0.0
2.851SerMet: 2.851 ± 0.0
4.073SerAsn: 4.073 ± 0.0
5.703SerPro: 5.703 ± 0.0
3.259SerGln: 3.259 ± 0.0
2.037SerArg: 2.037 ± 0.0
9.369SerSer: 9.369 ± 0.0
4.481SerThr: 4.481 ± 0.0
6.925SerVal: 6.925 ± 0.0
0.815SerTrp: 0.815 ± 0.0
4.888SerTyr: 4.888 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
4.481ThrAla: 4.481 ± 0.0
0.407ThrCys: 0.407 ± 0.0
1.222ThrAsp: 1.222 ± 0.0
4.073ThrGlu: 4.073 ± 0.0
1.629ThrPhe: 1.629 ± 0.0
1.629ThrGly: 1.629 ± 0.0
0.815ThrHis: 0.815 ± 0.0
5.295ThrIle: 5.295 ± 0.0
2.037ThrLys: 2.037 ± 0.0
2.037ThrLeu: 2.037 ± 0.0
2.037ThrMet: 2.037 ± 0.0
2.444ThrAsn: 2.444 ± 0.0
2.037ThrPro: 2.037 ± 0.0
2.037ThrGln: 2.037 ± 0.0
2.851ThrArg: 2.851 ± 0.0
4.888ThrSer: 4.888 ± 0.0
2.444ThrThr: 2.444 ± 0.0
3.259ThrVal: 3.259 ± 0.0
1.629ThrTrp: 1.629 ± 0.0
2.444ThrTyr: 2.444 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
2.851ValAla: 2.851 ± 0.0
1.222ValCys: 1.222 ± 0.0
3.666ValAsp: 3.666 ± 0.0
4.888ValGlu: 4.888 ± 0.0
3.666ValPhe: 3.666 ± 0.0
4.888ValGly: 4.888 ± 0.0
2.444ValHis: 2.444 ± 0.0
2.851ValIle: 2.851 ± 0.0
6.11ValLys: 6.11 ± 0.0
4.888ValLeu: 4.888 ± 0.0
0.407ValMet: 0.407 ± 0.0
2.037ValAsn: 2.037 ± 0.0
3.259ValPro: 3.259 ± 0.0
2.037ValGln: 2.037 ± 0.0
3.666ValArg: 3.666 ± 0.0
9.776ValSer: 9.776 ± 0.0
3.259ValThr: 3.259 ± 0.0
5.295ValVal: 5.295 ± 0.0
0.815ValTrp: 0.815 ± 0.0
1.629ValTyr: 1.629 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.222TrpAla: 1.222 ± 0.0
0.0TrpCys: 0.0 ± 0.0
1.222TrpAsp: 1.222 ± 0.0
0.815TrpGlu: 0.815 ± 0.0
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
1.629TrpIle: 1.629 ± 0.0
0.407TrpLys: 0.407 ± 0.0
0.407TrpLeu: 0.407 ± 0.0
0.815TrpMet: 0.815 ± 0.0
2.037TrpAsn: 2.037 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.407TrpArg: 0.407 ± 0.0
0.815TrpSer: 0.815 ± 0.0
1.222TrpThr: 1.222 ± 0.0
0.407TrpVal: 0.407 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.407TrpTyr: 0.407 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.444TyrAla: 2.444 ± 0.0
0.407TyrCys: 0.407 ± 0.0
0.815TyrAsp: 0.815 ± 0.0
2.444TyrGlu: 2.444 ± 0.0
2.037TyrPhe: 2.037 ± 0.0
3.259TyrGly: 3.259 ± 0.0
0.815TyrHis: 0.815 ± 0.0
4.073TyrIle: 4.073 ± 0.0
1.222TyrLys: 1.222 ± 0.0
4.888TyrLeu: 4.888 ± 0.0
0.815TyrMet: 0.815 ± 0.0
2.037TyrAsn: 2.037 ± 0.0
0.407TyrPro: 0.407 ± 0.0
1.629TyrGln: 1.629 ± 0.0
1.629TyrArg: 1.629 ± 0.0
4.888TyrSer: 4.888 ± 0.0
3.259TyrThr: 3.259 ± 0.0
2.444TyrVal: 2.444 ± 0.0
0.407TyrTrp: 0.407 ± 0.0
1.629TyrTyr: 1.629 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2456 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski