Pseudomonas jinjuensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5169 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H0BER0|A0A1H0BER0_9PSED Uncharacterized protein OS=Pseudomonas jinjuensis OX=198616 GN=SAMN05216193_10342 PE=4 SV=1
MM1 pKa = 7.48FKK3 pKa = 10.77LKK5 pKa = 10.14PLAIAILTLASAQVMAAGNTATQIQLSGDD34 pKa = 4.12GNDD37 pKa = 3.41STAMQTGISDD47 pKa = 4.27GNTSTQVQAGDD58 pKa = 3.48NNTANVRR65 pKa = 11.84QLDD68 pKa = 3.77VSTGNVAGQAQAGNGNTATIEE89 pKa = 4.35QKK91 pKa = 9.63WGAYY95 pKa = 8.76YY96 pKa = 10.94NEE98 pKa = 4.33AAQAQTGNGNTATVDD113 pKa = 3.34QHH115 pKa = 8.43DD116 pKa = 4.42EE117 pKa = 3.73ATANHH122 pKa = 6.56VYY124 pKa = 9.94QVQDD128 pKa = 3.26GSANKK133 pKa = 10.14AFAEE137 pKa = 4.02NAYY140 pKa = 10.6VSTGNYY146 pKa = 7.38ATQLQSGTSHH156 pKa = 6.4EE157 pKa = 4.11AEE159 pKa = 4.34IWQQWGEE166 pKa = 4.21GNQALQVQDD175 pKa = 4.63GDD177 pKa = 3.54DD178 pKa = 4.24HH179 pKa = 5.83YY180 pKa = 12.14AKK182 pKa = 10.41VYY184 pKa = 10.42QGADD188 pKa = 3.15ANSNISVQTQTGTSNTSTVNQLFSADD214 pKa = 3.49GNYY217 pKa = 10.3SEE219 pKa = 4.63VTQNGVGAGNSALVEE234 pKa = 4.24QNWGGGNVSVLDD246 pKa = 3.71QDD248 pKa = 4.59GDD250 pKa = 3.97GNDD253 pKa = 3.11AHH255 pKa = 6.48VTQQHH260 pKa = 6.12GDD262 pKa = 3.63GNGSALTQAGNGNLASVSQHH282 pKa = 6.96DD283 pKa = 3.85GDD285 pKa = 4.72GNQSALTQTGNYY297 pKa = 9.26NSASVTQADD306 pKa = 4.04GGWNVSSLSQSGNNHH321 pKa = 5.5QATVTQGGGNSNEE334 pKa = 4.63LYY336 pKa = 10.67FEE338 pKa = 4.07QDD340 pKa = 2.71DD341 pKa = 4.39DD342 pKa = 5.7GNVLTADD349 pKa = 3.85QSGTDD354 pKa = 3.68NLITGYY360 pKa = 9.97SHH362 pKa = 7.57GDD364 pKa = 3.55DD365 pKa = 3.3NVVDD369 pKa = 3.92VDD371 pKa = 4.38QVGSLNTAHH380 pKa = 6.42VEE382 pKa = 4.17QYY384 pKa = 10.74SGSSEE389 pKa = 3.87NLADD393 pKa = 3.83ISQTGSDD400 pKa = 3.35HH401 pKa = 6.35VATVLQGGMGNEE413 pKa = 3.84AFVTQTSTGNTAYY426 pKa = 10.8VLQAGTNGTATIIQNN441 pKa = 3.44

Molecular weight: 45.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H0JA05|A0A1H0JA05_9PSED Uncharacterized protein YydD contains DUF2326 domain OS=Pseudomonas jinjuensis OX=198616 GN=SAMN05216193_1114 PE=4 SV=1
MM1 pKa = 7.55PRR3 pKa = 11.84YY4 pKa = 10.08ALITGASSGIGLALAEE20 pKa = 4.06ALARR24 pKa = 11.84RR25 pKa = 11.84GQALVLVARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84DD37 pKa = 3.63ALEE40 pKa = 4.64SIACEE45 pKa = 3.49LAQRR49 pKa = 11.84FGVDD53 pKa = 3.18VLFRR57 pKa = 11.84TCDD60 pKa = 3.28LSEE63 pKa = 4.27PLQISGLLHH72 pKa = 6.66EE73 pKa = 5.77LDD75 pKa = 3.99QNGLDD80 pKa = 4.14IEE82 pKa = 4.63LLVNSAGIGSAGAFLEE98 pKa = 4.56HH99 pKa = 6.95DD100 pKa = 3.45WSRR103 pKa = 11.84EE104 pKa = 3.81RR105 pKa = 11.84EE106 pKa = 4.18LVEE109 pKa = 4.84LNVLALTRR117 pKa = 11.84LCHH120 pKa = 7.24AIGNRR125 pKa = 11.84MAQNGGGRR133 pKa = 11.84ILNVASLAALHH144 pKa = 6.49PGPWMSSYY152 pKa = 10.19HH153 pKa = 5.95ASKK156 pKa = 10.72AYY158 pKa = 10.08VLSFSEE164 pKa = 4.4GLRR167 pKa = 11.84EE168 pKa = 3.89EE169 pKa = 4.23LKK171 pKa = 10.79GRR173 pKa = 11.84GVKK176 pKa = 10.31VSLLCPGPTRR186 pKa = 11.84SAFFRR191 pKa = 11.84HH192 pKa = 6.13AGLDD196 pKa = 3.55GEE198 pKa = 4.37RR199 pKa = 11.84FEE201 pKa = 4.77GKK203 pKa = 10.28RR204 pKa = 11.84MLSPEE209 pKa = 3.64QVAFHH214 pKa = 5.94TVRR217 pKa = 11.84ALQRR221 pKa = 11.84NPAIIIPGWRR231 pKa = 11.84NRR233 pKa = 11.84LLAWCPRR240 pKa = 11.84LAPRR244 pKa = 11.84WLVRR248 pKa = 11.84KK249 pKa = 9.21LAGRR253 pKa = 11.84RR254 pKa = 11.84NRR256 pKa = 11.84LAVQRR261 pKa = 4.27

Molecular weight: 28.75 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5169

0

5169

1739259

26

4699

336.5

36.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.35 ± 0.039

1.042 ± 0.013

5.468 ± 0.027

6.092 ± 0.033

3.618 ± 0.021

8.444 ± 0.036

2.251 ± 0.016

4.54 ± 0.024

3.024 ± 0.029

11.756 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.272 ± 0.019

2.796 ± 0.026

5.031 ± 0.027

4.229 ± 0.023

7.206 ± 0.037

5.471 ± 0.021

4.464 ± 0.03

6.985 ± 0.032

1.447 ± 0.016

2.516 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski