Amino acid dipepetide frequency for Botrytis cinerea fusarivirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.665AlaAla: 4.665 ± 2.687
0.424AlaCys: 0.424 ± 0.222
3.393AlaAsp: 3.393 ± 0.422
3.817AlaGlu: 3.817 ± 1.666
3.817AlaPhe: 3.817 ± 0.533
3.817AlaGly: 3.817 ± 0.533
2.12AlaHis: 2.12 ± 1.088
2.545AlaIle: 2.545 ± 0.599
5.089AlaLys: 5.089 ± 1.732
8.482AlaLeu: 8.482 ± 0.689
3.393AlaMet: 3.393 ± 1.776
2.12AlaAsn: 2.12 ± 1.821
2.12AlaPro: 2.12 ± 0.355
3.393AlaGln: 3.393 ± 0.311
5.513AlaArg: 5.513 ± 0.688
5.513AlaSer: 5.513 ± 0.777
3.393AlaThr: 3.393 ± 0.311
2.545AlaVal: 2.545 ± 0.133
1.272AlaTrp: 1.272 ± 0.067
1.696AlaTyr: 1.696 ± 0.577
0.0AlaXaa: 0.0 ± 0.0
Cys
0.424CysAla: 0.424 ± 0.222
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.848CysGly: 0.848 ± 0.444
0.424CysHis: 0.424 ± 0.222
0.424CysIle: 0.424 ± 0.222
0.0CysLys: 0.0 ± 0.0
0.848CysLeu: 0.848 ± 0.444
0.0CysMet: 0.0 ± 0.0
0.848CysAsn: 0.848 ± 0.289
0.848CysPro: 0.848 ± 0.444
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
1.272CysSer: 1.272 ± 0.666
0.424CysThr: 0.424 ± 0.222
0.848CysVal: 0.848 ± 1.022
0.0CysTrp: 0.0 ± 0.0
0.424CysTyr: 0.424 ± 0.222
0.0CysXaa: 0.0 ± 0.0
Asp
2.12AspAla: 2.12 ± 1.088
0.424AspCys: 0.424 ± 0.222
4.665AspAsp: 4.665 ± 2.687
3.817AspGlu: 3.817 ± 0.933
2.12AspPhe: 2.12 ± 0.377
2.12AspGly: 2.12 ± 0.355
1.696AspHis: 1.696 ± 0.888
2.969AspIle: 2.969 ± 1.377
1.696AspLys: 1.696 ± 0.577
2.969AspLeu: 2.969 ± 0.822
1.696AspMet: 1.696 ± 0.155
0.848AspAsn: 0.848 ± 0.444
2.12AspPro: 2.12 ± 1.088
1.272AspGln: 1.272 ± 0.666
2.12AspArg: 2.12 ± 0.355
3.393AspSer: 3.393 ± 1.044
2.545AspThr: 2.545 ± 0.133
3.393AspVal: 3.393 ± 0.311
0.848AspTrp: 0.848 ± 0.289
2.12AspTyr: 2.12 ± 1.11
0.0AspXaa: 0.0 ± 0.0
Glu
4.665GluAla: 4.665 ± 1.221
0.424GluCys: 0.424 ± 0.222
3.817GluAsp: 3.817 ± 0.933
7.209GluGlu: 7.209 ± 2.82
2.12GluPhe: 2.12 ± 1.11
2.545GluGly: 2.545 ± 3.065
0.424GluHis: 0.424 ± 0.222
2.12GluIle: 2.12 ± 0.355
5.089GluLys: 5.089 ± 0.999
6.785GluLeu: 6.785 ± 1.577
2.12GluMet: 2.12 ± 0.355
2.545GluAsn: 2.545 ± 0.133
0.848GluPro: 0.848 ± 1.022
1.696GluGln: 1.696 ± 0.577
1.272GluArg: 1.272 ± 0.666
4.665GluSer: 4.665 ± 0.244
4.241GluThr: 4.241 ± 0.711
4.241GluVal: 4.241 ± 0.755
0.848GluTrp: 0.848 ± 0.289
0.848GluTyr: 0.848 ± 0.289
0.0GluXaa: 0.0 ± 0.0
Phe
2.969PheAla: 2.969 ± 0.089
0.0PheCys: 0.0 ± 0.0
1.696PheAsp: 1.696 ± 0.155
2.969PheGlu: 2.969 ± 0.089
2.12PhePhe: 2.12 ± 0.355
2.545PheGly: 2.545 ± 0.133
1.272PheHis: 1.272 ± 0.067
4.241PheIle: 4.241 ± 0.755
3.817PheLys: 3.817 ± 0.2
5.937PheLeu: 5.937 ± 0.91
0.424PheMet: 0.424 ± 0.222
1.272PheAsn: 1.272 ± 0.067
2.12PhePro: 2.12 ± 0.377
2.12PheGln: 2.12 ± 0.355
3.393PheArg: 3.393 ± 0.422
5.089PheSer: 5.089 ± 0.267
2.545PheThr: 2.545 ± 0.133
2.12PheVal: 2.12 ± 1.11
1.696PheTrp: 1.696 ± 0.155
0.848PheTyr: 0.848 ± 0.444
0.0PheXaa: 0.0 ± 0.0
Gly
2.12GlyAla: 2.12 ± 0.355
0.0GlyCys: 0.0 ± 0.0
2.545GlyAsp: 2.545 ± 0.599
2.545GlyGlu: 2.545 ± 0.133
2.969GlyPhe: 2.969 ± 0.644
3.817GlyGly: 3.817 ± 1.266
3.393GlyHis: 3.393 ± 1.044
2.545GlyIle: 2.545 ± 0.599
4.665GlyLys: 4.665 ± 0.244
10.178GlyLeu: 10.178 ± 1.266
1.696GlyMet: 1.696 ± 1.31
0.848GlyAsn: 0.848 ± 0.289
2.969GlyPro: 2.969 ± 1.377
1.696GlyGln: 1.696 ± 0.155
2.969GlyArg: 2.969 ± 1.377
3.393GlySer: 3.393 ± 0.422
5.937GlyThr: 5.937 ± 1.643
3.393GlyVal: 3.393 ± 0.311
0.424GlyTrp: 0.424 ± 0.222
2.12GlyTyr: 2.12 ± 1.821
0.0GlyXaa: 0.0 ± 0.0
His
1.696HisAla: 1.696 ± 0.577
0.424HisCys: 0.424 ± 0.222
0.424HisAsp: 0.424 ± 0.222
1.696HisGlu: 1.696 ± 0.577
2.12HisPhe: 2.12 ± 0.377
1.272HisGly: 1.272 ± 0.067
0.0HisHis: 0.0 ± 0.0
1.272HisIle: 1.272 ± 0.666
0.424HisLys: 0.424 ± 0.222
4.665HisLeu: 4.665 ± 1.71
0.424HisMet: 0.424 ± 0.222
0.424HisAsn: 0.424 ± 0.222
0.848HisPro: 0.848 ± 1.022
0.424HisGln: 0.424 ± 0.222
1.272HisArg: 1.272 ± 0.666
0.848HisSer: 0.848 ± 0.444
0.424HisThr: 0.424 ± 0.511
1.696HisVal: 1.696 ± 0.155
0.848HisTrp: 0.848 ± 0.289
1.696HisTyr: 1.696 ± 0.888
0.0HisXaa: 0.0 ± 0.0
Ile
3.393IleAla: 3.393 ± 0.311
0.848IleCys: 0.848 ± 0.444
3.393IleAsp: 3.393 ± 0.422
2.545IleGlu: 2.545 ± 0.133
3.817IlePhe: 3.817 ± 0.2
2.545IleGly: 2.545 ± 0.599
0.424IleHis: 0.424 ± 0.222
3.393IleIle: 3.393 ± 1.155
2.12IleLys: 2.12 ± 1.11
5.513IleLeu: 5.513 ± 1.51
0.848IleMet: 0.848 ± 0.289
0.848IleAsn: 0.848 ± 0.444
1.696IlePro: 1.696 ± 0.888
2.12IleGln: 2.12 ± 0.377
2.969IleArg: 2.969 ± 0.089
3.817IleSer: 3.817 ± 1.266
2.545IleThr: 2.545 ± 0.866
2.969IleVal: 2.969 ± 0.822
0.0IleTrp: 0.0 ± 0.0
1.272IleTyr: 1.272 ± 0.666
0.0IleXaa: 0.0 ± 0.0
Lys
4.665LysAla: 4.665 ± 0.489
0.424LysCys: 0.424 ± 0.222
3.393LysAsp: 3.393 ± 1.044
3.817LysGlu: 3.817 ± 0.933
4.665LysPhe: 4.665 ± 0.489
3.817LysGly: 3.817 ± 2.398
2.969LysHis: 2.969 ± 0.644
2.969LysIle: 2.969 ± 0.089
3.817LysLys: 3.817 ± 0.533
5.513LysLeu: 5.513 ± 0.045
2.545LysMet: 2.545 ± 0.599
1.696LysAsn: 1.696 ± 0.577
2.12LysPro: 2.12 ± 0.355
0.424LysGln: 0.424 ± 0.222
2.969LysArg: 2.969 ± 1.377
6.361LysSer: 6.361 ± 1.066
2.969LysThr: 2.969 ± 0.089
5.513LysVal: 5.513 ± 0.777
2.12LysTrp: 2.12 ± 1.11
1.696LysTyr: 1.696 ± 0.888
0.0LysXaa: 0.0 ± 0.0
Leu
9.33LeuAla: 9.33 ± 0.977
0.848LeuCys: 0.848 ± 0.289
4.241LeuAsp: 4.241 ± 0.711
7.209LeuGlu: 7.209 ± 0.622
4.665LeuPhe: 4.665 ± 0.244
6.785LeuGly: 6.785 ± 0.111
2.12LeuHis: 2.12 ± 1.11
6.361LeuIle: 6.361 ± 1.066
4.665LeuLys: 4.665 ± 0.244
11.45LeuLeu: 11.45 ± 0.6
3.817LeuMet: 3.817 ± 1.386
4.241LeuAsn: 4.241 ± 0.022
8.906LeuPro: 8.906 ± 1.732
2.545LeuGln: 2.545 ± 0.866
9.33LeuArg: 9.33 ± 0.977
7.209LeuSer: 7.209 ± 2.309
7.634LeuThr: 7.634 ± 0.4
9.33LeuVal: 9.33 ± 1.221
1.272LeuTrp: 1.272 ± 0.067
0.848LeuTyr: 0.848 ± 0.444
0.0LeuXaa: 0.0 ± 0.0
Met
3.393MetAla: 3.393 ± 1.888
0.0MetCys: 0.0 ± 0.0
2.545MetAsp: 2.545 ± 0.133
2.12MetGlu: 2.12 ± 1.088
1.272MetPhe: 1.272 ± 0.666
0.848MetGly: 0.848 ± 0.444
0.848MetHis: 0.848 ± 0.444
0.424MetIle: 0.424 ± 0.222
1.696MetLys: 1.696 ± 0.155
1.696MetLeu: 1.696 ± 0.888
0.424MetMet: 0.424 ± 0.222
2.12MetAsn: 2.12 ± 0.377
1.272MetPro: 1.272 ± 0.799
1.696MetGln: 1.696 ± 0.577
0.848MetArg: 0.848 ± 1.022
1.272MetSer: 1.272 ± 0.666
3.393MetThr: 3.393 ± 1.776
2.12MetVal: 2.12 ± 0.377
1.696MetTrp: 1.696 ± 0.888
0.424MetTyr: 0.424 ± 0.222
0.0MetXaa: 0.0 ± 0.0
Asn
2.12AsnAla: 2.12 ± 0.355
0.0AsnCys: 0.0 ± 0.0
1.272AsnAsp: 1.272 ± 0.067
2.12AsnGlu: 2.12 ± 1.821
1.696AsnPhe: 1.696 ± 0.888
2.545AsnGly: 2.545 ± 0.866
0.424AsnHis: 0.424 ± 0.222
1.272AsnIle: 1.272 ± 0.666
1.696AsnLys: 1.696 ± 0.888
4.665AsnLeu: 4.665 ± 1.221
0.848AsnMet: 0.848 ± 1.022
0.424AsnAsn: 0.424 ± 0.222
3.393AsnPro: 3.393 ± 0.311
1.272AsnGln: 1.272 ± 0.666
1.272AsnArg: 1.272 ± 0.799
2.545AsnSer: 2.545 ± 0.133
2.969AsnThr: 2.969 ± 0.089
4.241AsnVal: 4.241 ± 0.755
0.424AsnTrp: 0.424 ± 0.511
1.272AsnTyr: 1.272 ± 0.666
0.0AsnXaa: 0.0 ± 0.0
Pro
2.545ProAla: 2.545 ± 0.599
0.848ProCys: 0.848 ± 1.022
1.696ProAsp: 1.696 ± 0.155
2.12ProGlu: 2.12 ± 0.355
3.393ProPhe: 3.393 ± 0.422
3.817ProGly: 3.817 ± 1.666
0.424ProHis: 0.424 ± 0.222
2.545ProIle: 2.545 ± 0.599
2.12ProLys: 2.12 ± 1.11
5.089ProLeu: 5.089 ± 2.465
1.272ProMet: 1.272 ± 0.067
3.817ProAsn: 3.817 ± 0.2
3.393ProPro: 3.393 ± 1.888
1.696ProGln: 1.696 ± 0.155
3.393ProArg: 3.393 ± 0.311
5.089ProSer: 5.089 ± 0.267
3.817ProThr: 3.817 ± 0.933
3.817ProVal: 3.817 ± 1.266
1.696ProTrp: 1.696 ± 0.888
1.272ProTyr: 1.272 ± 0.067
0.0ProXaa: 0.0 ± 0.0
Gln
1.272GlnAla: 1.272 ± 0.799
0.0GlnCys: 0.0 ± 0.0
1.696GlnAsp: 1.696 ± 0.155
1.696GlnGlu: 1.696 ± 0.155
1.696GlnPhe: 1.696 ± 0.155
1.272GlnGly: 1.272 ± 0.067
0.424GlnHis: 0.424 ± 0.511
1.696GlnIle: 1.696 ± 0.577
2.545GlnLys: 2.545 ± 0.866
4.241GlnLeu: 4.241 ± 0.022
0.848GlnMet: 0.848 ± 0.444
1.272GlnAsn: 1.272 ± 0.666
0.848GlnPro: 0.848 ± 0.289
0.848GlnGln: 0.848 ± 0.444
2.545GlnArg: 2.545 ± 0.599
2.969GlnSer: 2.969 ± 0.089
1.696GlnThr: 1.696 ± 1.31
3.393GlnVal: 3.393 ± 1.776
0.848GlnTrp: 0.848 ± 0.444
2.12GlnTyr: 2.12 ± 1.11
0.0GlnXaa: 0.0 ± 0.0
Arg
3.393ArgAla: 3.393 ± 0.422
0.424ArgCys: 0.424 ± 0.222
2.12ArgAsp: 2.12 ± 1.088
2.969ArgGlu: 2.969 ± 0.089
2.969ArgPhe: 2.969 ± 0.822
5.089ArgGly: 5.089 ± 0.999
1.272ArgHis: 1.272 ± 0.067
1.696ArgIle: 1.696 ± 0.155
6.785ArgLys: 6.785 ± 0.844
3.393ArgLeu: 3.393 ± 1.044
1.272ArgMet: 1.272 ± 0.666
3.393ArgAsn: 3.393 ± 1.888
2.545ArgPro: 2.545 ± 0.599
1.696ArgGln: 1.696 ± 0.577
3.393ArgArg: 3.393 ± 1.044
5.089ArgSer: 5.089 ± 0.267
3.393ArgThr: 3.393 ± 0.311
3.393ArgVal: 3.393 ± 1.888
1.272ArgTrp: 1.272 ± 0.666
0.424ArgTyr: 0.424 ± 0.222
0.0ArgXaa: 0.0 ± 0.0
Ser
5.937SerAla: 5.937 ± 1.643
1.272SerCys: 1.272 ± 0.666
1.696SerAsp: 1.696 ± 0.155
2.545SerGlu: 2.545 ± 0.133
1.272SerPhe: 1.272 ± 0.067
4.241SerGly: 4.241 ± 0.022
2.12SerHis: 2.12 ± 0.377
3.817SerIle: 3.817 ± 0.533
7.209SerLys: 7.209 ± 3.553
11.874SerLeu: 11.874 ± 1.088
2.12SerMet: 2.12 ± 1.11
3.393SerAsn: 3.393 ± 0.311
3.817SerPro: 3.817 ± 0.933
5.089SerGln: 5.089 ± 0.466
4.241SerArg: 4.241 ± 1.488
6.361SerSer: 6.361 ± 0.399
3.393SerThr: 3.393 ± 0.311
3.393SerVal: 3.393 ± 1.044
1.272SerTrp: 1.272 ± 0.799
2.969SerTyr: 2.969 ± 1.554
0.0SerXaa: 0.0 ± 0.0
Thr
5.937ThrAla: 5.937 ± 0.177
0.424ThrCys: 0.424 ± 0.222
1.696ThrAsp: 1.696 ± 0.888
2.545ThrGlu: 2.545 ± 0.866
2.969ThrPhe: 2.969 ± 0.644
5.937ThrGly: 5.937 ± 3.109
0.848ThrHis: 0.848 ± 0.444
2.545ThrIle: 2.545 ± 0.133
5.089ThrLys: 5.089 ± 0.267
5.937ThrLeu: 5.937 ± 3.109
1.272ThrMet: 1.272 ± 0.565
2.545ThrAsn: 2.545 ± 1.332
6.361ThrPro: 6.361 ± 1.066
1.272ThrGln: 1.272 ± 0.067
1.696ThrArg: 1.696 ± 0.577
5.937ThrSer: 5.937 ± 1.288
2.545ThrThr: 2.545 ± 0.866
3.393ThrVal: 3.393 ± 1.155
1.272ThrTrp: 1.272 ± 0.799
0.848ThrTyr: 0.848 ± 0.444
0.0ThrXaa: 0.0 ± 0.0
Val
3.393ValAla: 3.393 ± 0.422
0.848ValCys: 0.848 ± 0.444
2.12ValAsp: 2.12 ± 0.377
4.241ValGlu: 4.241 ± 0.022
3.393ValPhe: 3.393 ± 1.155
2.969ValGly: 2.969 ± 0.644
1.696ValHis: 1.696 ± 0.155
2.545ValIle: 2.545 ± 1.332
4.241ValLys: 4.241 ± 0.711
7.634ValLeu: 7.634 ± 1.066
2.545ValMet: 2.545 ± 0.866
1.696ValAsn: 1.696 ± 0.155
5.513ValPro: 5.513 ± 1.421
2.545ValGln: 2.545 ± 1.332
5.089ValArg: 5.089 ± 1.732
4.241ValSer: 4.241 ± 2.22
4.241ValThr: 4.241 ± 1.488
1.696ValVal: 1.696 ± 0.155
2.545ValTrp: 2.545 ± 0.133
2.545ValTyr: 2.545 ± 0.599
0.0ValXaa: 0.0 ± 0.0
Trp
1.272TrpAla: 1.272 ± 0.067
0.0TrpCys: 0.0 ± 0.0
1.696TrpAsp: 1.696 ± 0.577
0.848TrpGlu: 0.848 ± 0.289
0.0TrpPhe: 0.0 ± 0.0
1.272TrpGly: 1.272 ± 0.067
0.0TrpHis: 0.0 ± 0.0
1.272TrpIle: 1.272 ± 0.666
0.848TrpLys: 0.848 ± 0.444
3.817TrpLeu: 3.817 ± 0.2
0.848TrpMet: 0.848 ± 0.289
1.272TrpAsn: 1.272 ± 0.067
1.272TrpPro: 1.272 ± 0.067
0.424TrpGln: 0.424 ± 0.222
0.424TrpArg: 0.424 ± 0.222
1.272TrpSer: 1.272 ± 0.666
1.696TrpThr: 1.696 ± 0.888
1.696TrpVal: 1.696 ± 0.577
0.424TrpTrp: 0.424 ± 0.222
0.848TrpTyr: 0.848 ± 0.444
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.817TyrAla: 3.817 ± 1.266
0.0TyrCys: 0.0 ± 0.0
0.848TyrAsp: 0.848 ± 0.444
1.696TyrGlu: 1.696 ± 0.888
2.12TyrPhe: 2.12 ± 1.11
2.12TyrGly: 2.12 ± 1.11
0.0TyrHis: 0.0 ± 0.0
0.424TyrIle: 0.424 ± 0.222
0.848TyrLys: 0.848 ± 0.444
2.545TyrLeu: 2.545 ± 0.599
1.272TyrMet: 1.272 ± 0.067
0.848TyrAsn: 0.848 ± 0.289
0.848TyrPro: 0.848 ± 0.444
1.696TyrGln: 1.696 ± 0.577
1.272TyrArg: 1.272 ± 0.666
1.696TyrSer: 1.696 ± 0.155
1.272TyrThr: 1.272 ± 0.067
2.545TyrVal: 2.545 ± 0.599
0.424TyrTrp: 0.424 ± 0.222
0.424TyrTyr: 0.424 ± 0.511
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (2359 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski