Sunxiuqinia dokdonensis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Marinilabiliales; Prolixibacteraceae; Sunxiuqinia

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4693 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0L8VCW9|A0A0L8VCW9_9BACT Dihydroorotate dehydrogenase OS=Sunxiuqinia dokdonensis OX=1409788 GN=pyrD PE=3 SV=1
MM1 pKa = 7.42KK2 pKa = 10.16KK3 pKa = 9.98IIPIAVSVLMIGLVACEE20 pKa = 4.1PEE22 pKa = 4.44EE23 pKa = 4.45VAFDD27 pKa = 3.65PAADD31 pKa = 3.46VFVITKK37 pKa = 8.49TVATEE42 pKa = 4.06NEE44 pKa = 3.66VDD46 pKa = 3.7TVYY49 pKa = 11.42GLALHH54 pKa = 7.0AFANKK59 pKa = 9.21PMQSVKK65 pKa = 8.98VTSVDD70 pKa = 2.85NTTYY74 pKa = 11.05DD75 pKa = 3.36LEE77 pKa = 4.67SYY79 pKa = 10.19EE80 pKa = 4.29GYY82 pKa = 9.9PYY84 pKa = 11.09DD85 pKa = 5.78FYY87 pKa = 11.75AQTEE91 pKa = 4.14DD92 pKa = 4.16DD93 pKa = 4.67DD94 pKa = 5.72FSAEE98 pKa = 4.09MPEE101 pKa = 3.9SGAYY105 pKa = 9.65SFNIVAQSGEE115 pKa = 4.2TSTLSDD121 pKa = 3.78NLSDD125 pKa = 4.27DD126 pKa = 4.03VIYY129 pKa = 8.77PTDD132 pKa = 3.71TIKK135 pKa = 11.16YY136 pKa = 10.15AFDD139 pKa = 4.1DD140 pKa = 4.32AQNKK144 pKa = 7.78MKK146 pKa = 9.68LTWTEE151 pKa = 3.95IEE153 pKa = 4.2DD154 pKa = 3.59ADD156 pKa = 3.98YY157 pKa = 11.3LIVKK161 pKa = 8.7MFEE164 pKa = 3.8QDD166 pKa = 3.36DD167 pKa = 4.12DD168 pKa = 4.13QVFQSSSLLGDD179 pKa = 3.42KK180 pKa = 10.81EE181 pKa = 4.58EE182 pKa = 4.28YY183 pKa = 9.72TISASGSGWASDD195 pKa = 3.58FQPADD200 pKa = 3.02GATYY204 pKa = 10.07IIQLDD209 pKa = 3.64AFKK212 pKa = 11.24YY213 pKa = 9.95EE214 pKa = 4.2SGQNGVNLQAKK225 pKa = 9.64SISLQEE231 pKa = 4.12IVWGEE236 pKa = 3.86EE237 pKa = 3.67

Molecular weight: 26.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0L8V9D6|A0A0L8V9D6_9BACT Dehydrogenase OS=Sunxiuqinia dokdonensis OX=1409788 GN=NC99_21860 PE=4 SV=1
MM1 pKa = 7.53SLLLLTSNTQPRR13 pKa = 11.84FRR15 pKa = 11.84GPINVGNRR23 pKa = 11.84SHH25 pKa = 7.1PRR27 pKa = 11.84RR28 pKa = 11.84PKK30 pKa = 9.95FSFRR34 pKa = 11.84TLLRR38 pKa = 11.84KK39 pKa = 9.25AVHH42 pKa = 6.56RR43 pKa = 11.84KK44 pKa = 8.9

Molecular weight: 5.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4693

0

4693

1442061

37

2867

307.3

34.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.985 ± 0.037

0.816 ± 0.015

5.604 ± 0.028

6.827 ± 0.033

5.158 ± 0.027

6.793 ± 0.036

1.973 ± 0.014

6.896 ± 0.036

6.534 ± 0.037

9.642 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.475 ± 0.017

5.089 ± 0.028

3.809 ± 0.021

4.004 ± 0.026

4.363 ± 0.025

6.255 ± 0.028

5.163 ± 0.037

6.456 ± 0.023

1.285 ± 0.015

3.874 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski