Podoviridae sp. ctQNx1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae

Average proteome isoelectric point is 6.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 73 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5Q2W9U1|A0A5Q2W9U1_9CAUD Uncharacterized protein OS=Podoviridae sp. ctQNx1 OX=2656711 PE=4 SV=1
MM1 pKa = 8.13VYY3 pKa = 10.01EE4 pKa = 4.12IDD6 pKa = 3.71GGAVLEE12 pKa = 4.27NEE14 pKa = 4.55EE15 pKa = 4.17YY16 pKa = 10.76TLVGNDD22 pKa = 4.29AEE24 pKa = 4.32NAMDD28 pKa = 4.53DD29 pKa = 4.24RR30 pKa = 11.84LTITHH35 pKa = 7.08KK36 pKa = 10.98ASGDD40 pKa = 3.95SVTLTGLANMTMRR53 pKa = 11.84HH54 pKa = 4.95VLAEE58 pKa = 3.69HH59 pKa = 6.48GMRR62 pKa = 11.84VIDD65 pKa = 5.06LYY67 pKa = 10.73FEE69 pKa = 3.87RR70 pKa = 11.84TAFFTLVNNTPGSTFIPASLSGSAVSS96 pKa = 3.93

Molecular weight: 10.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5Q2W6B1|A0A5Q2W6B1_9CAUD Uncharacterized protein OS=Podoviridae sp. ctQNx1 OX=2656711 PE=4 SV=1
MM1 pKa = 7.41LKK3 pKa = 9.88VRR5 pKa = 11.84IWFRR9 pKa = 11.84VILPATATSRR19 pKa = 11.84GAPRR23 pKa = 11.84SGHH26 pKa = 6.07PGVHH30 pKa = 4.93IVVNARR36 pKa = 11.84VHH38 pKa = 5.63KK39 pKa = 10.7

Molecular weight: 4.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

73

0

73

11807

29

752

161.7

18.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.672 ± 0.537

1.609 ± 0.215

4.853 ± 0.28

6.488 ± 0.439

3.481 ± 0.242

7.275 ± 0.328

2.312 ± 0.228

5.717 ± 0.178

5.471 ± 0.36

7.758 ± 0.232

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.159 ± 0.166

4.743 ± 0.279

4.226 ± 0.217

4.955 ± 0.56

5.793 ± 0.295

5.742 ± 0.32

5.632 ± 0.312

6.267 ± 0.414

1.448 ± 0.151

3.396 ± 0.174
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski