Streptomyces niveus NCIMB 11891

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces niveus

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7746 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|V6KJK0|V6KJK0_STRNV OmpA-like domain-containing protein OS=Streptomyces niveus NCIMB 11891 OX=1352941 GN=M877_06490 PE=4 SV=1
MM1 pKa = 7.34LTTRR5 pKa = 11.84YY6 pKa = 10.08VPGSPNWADD15 pKa = 3.5LATPDD20 pKa = 4.18IEE22 pKa = 4.61GAKK25 pKa = 9.0TFYY28 pKa = 10.89GGVLGWDD35 pKa = 3.67HH36 pKa = 6.64VPAGPEE42 pKa = 3.6FGGYY46 pKa = 11.01GMFQLNGKK54 pKa = 6.64TVAGVMQLPAEE65 pKa = 4.28TVPLSWTLYY74 pKa = 9.88FQTADD79 pKa = 3.21ATATSSAVKK88 pKa = 10.59DD89 pKa = 3.51NGGTVVNEE97 pKa = 3.93PMDD100 pKa = 3.98VEE102 pKa = 4.27DD103 pKa = 4.6LGRR106 pKa = 11.84MTLCADD112 pKa = 3.51PAGAGFATWQPGTNTGLEE130 pKa = 4.18ATDD133 pKa = 4.17TPGTLCWAEE142 pKa = 4.85LYY144 pKa = 10.39TPDD147 pKa = 3.02VDD149 pKa = 4.35AAVGFYY155 pKa = 10.91GSVFGWEE162 pKa = 4.29TTTMPMPGGGGDD174 pKa = 3.55YY175 pKa = 11.46VMVHH179 pKa = 6.55PAGKK183 pKa = 10.57GPDD186 pKa = 3.3GMFAGVVEE194 pKa = 4.2NRR196 pKa = 11.84PDD198 pKa = 3.35TGLGATGPNWLLYY211 pKa = 10.52FGTADD216 pKa = 3.75CDD218 pKa = 3.69AAVAASDD225 pKa = 3.71RR226 pKa = 11.84LGGTTVQEE234 pKa = 4.08PTDD237 pKa = 3.52IEE239 pKa = 4.59GVGRR243 pKa = 11.84FAVLTDD249 pKa = 3.86PYY251 pKa = 10.32GARR254 pKa = 11.84LAVMQGVSQDD264 pKa = 3.21TT265 pKa = 3.52

Molecular weight: 27.5 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|V6K2B0|V6K2B0_STRNV Membrane protein OS=Streptomyces niveus NCIMB 11891 OX=1352941 GN=M877_20115 PE=4 SV=1
MM1 pKa = 7.49HH2 pKa = 7.21SGVIASFSWAHH13 pKa = 6.57GDD15 pKa = 3.54SQAMSRR21 pKa = 11.84LPNHH25 pKa = 6.51HH26 pKa = 6.67LWSPRR31 pKa = 11.84VSKK34 pKa = 10.08RR35 pKa = 11.84TFQPNNRR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84AKK46 pKa = 8.7THH48 pKa = 5.15GFRR51 pKa = 11.84LRR53 pKa = 11.84MRR55 pKa = 11.84TRR57 pKa = 11.84AGRR60 pKa = 11.84AILANRR66 pKa = 11.84RR67 pKa = 11.84GKK69 pKa = 10.51GRR71 pKa = 11.84ANLSAA76 pKa = 4.66

Molecular weight: 8.69 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7746

0

7746

2460520

27

5582

317.7

33.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.364 ± 0.038

0.731 ± 0.007

6.159 ± 0.025

5.66 ± 0.025

2.736 ± 0.017

9.542 ± 0.028

2.232 ± 0.015

3.263 ± 0.019

2.215 ± 0.025

10.305 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.75 ± 0.011

1.852 ± 0.017

6.046 ± 0.024

2.686 ± 0.016

7.915 ± 0.038

5.229 ± 0.019

6.297 ± 0.026

8.436 ± 0.03

1.501 ± 0.013

2.082 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski