Duck adenovirus 1

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Atadenovirus; Duck atadenovirus A

Average proteome isoelectric point is 6.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 29 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|O11413|O11413_9ADEN IVa2 protein OS=Duck adenovirus 1 OX=130329 GN=IVa2 PE=4 SV=1
MM1 pKa = 7.93AFRR4 pKa = 11.84PAPPPAPFTAFPYY17 pKa = 9.6LTGNLPTWSVSTVKK31 pKa = 10.44NDD33 pKa = 3.2PSMPLGAYY41 pKa = 10.57LMLPSEE47 pKa = 4.26NPEE50 pKa = 4.05DD51 pKa = 3.91VFNKK55 pKa = 9.52YY56 pKa = 7.0QTVYY60 pKa = 10.6LVPGEE65 pKa = 4.07QYY67 pKa = 9.77RR68 pKa = 11.84WKK70 pKa = 10.47QVIIKK75 pKa = 10.33SSITIHH81 pKa = 5.84GQGALVKK88 pKa = 10.25LDD90 pKa = 3.71GPGPSLTISGGSGLPIDD107 pKa = 4.05MTVEE111 pKa = 3.56LRR113 pKa = 11.84DD114 pKa = 3.65INFKK118 pKa = 11.02GLDD121 pKa = 3.37IPPDD125 pKa = 3.63RR126 pKa = 11.84EE127 pKa = 4.07EE128 pKa = 4.25LMEE131 pKa = 4.79DD132 pKa = 2.78AFLRR136 pKa = 11.84HH137 pKa = 5.37SAIWSHH143 pKa = 5.2NVTRR147 pKa = 11.84TVINGCSFVNFKK159 pKa = 10.38GAAVWFYY166 pKa = 11.53DD167 pKa = 5.14EE168 pKa = 4.44DD169 pKa = 4.39TTWSGRR175 pKa = 11.84IFAEE179 pKa = 3.37QHH181 pKa = 6.02LFINNRR187 pKa = 11.84ITGCRR192 pKa = 11.84IGLALGSVSRR202 pKa = 11.84NSVASHH208 pKa = 6.85NIFNDD213 pKa = 3.15CHH215 pKa = 7.03VCFNVLGGGWTLVNNCIMNSRR236 pKa = 11.84CAYY239 pKa = 9.33LHH241 pKa = 6.52AKK243 pKa = 9.21EE244 pKa = 4.34GMWYY248 pKa = 10.16SGPATSGPALVNVFSGNVLNNCAANGNMWPTDD280 pKa = 3.64YY281 pKa = 11.23LGGGDD286 pKa = 4.25VPLKK290 pKa = 10.56LAAFYY295 pKa = 10.7FDD297 pKa = 5.81DD298 pKa = 4.66EE299 pKa = 4.64DD300 pKa = 5.56AIPPVWTGNAHH311 pKa = 5.38NWADD315 pKa = 3.42VTLTKK320 pKa = 10.55FSSDD324 pKa = 3.33LEE326 pKa = 4.6SYY328 pKa = 10.86SITGCMFIGQTTAVPSAGRR347 pKa = 11.84IYY349 pKa = 10.83VGNTISDD356 pKa = 3.2KK357 pKa = 11.26VYY359 pKa = 10.61FFGCSGNGVYY369 pKa = 10.58LYY371 pKa = 9.14GTTDD375 pKa = 3.39ANLFPDD381 pKa = 4.81DD382 pKa = 4.5FGTAQSGNPPSS393 pKa = 3.43

Molecular weight: 42.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|O11420|O11420_9ADEN PVI protein OS=Duck adenovirus 1 OX=130329 GN=pVI PE=4 SV=1
MM1 pKa = 7.46RR2 pKa = 11.84RR3 pKa = 11.84SRR5 pKa = 11.84SYY7 pKa = 9.91GGLRR11 pKa = 11.84YY12 pKa = 8.69GHH14 pKa = 5.63SVVRR18 pKa = 11.84YY19 pKa = 8.22RR20 pKa = 11.84RR21 pKa = 11.84SSQVRR26 pKa = 11.84ARR28 pKa = 11.84RR29 pKa = 11.84PRR31 pKa = 11.84RR32 pKa = 11.84RR33 pKa = 11.84LKK35 pKa = 10.99GGFLPAIIPLIAAAISAAPAIAGTVIAAKK64 pKa = 10.16NARR67 pKa = 3.7

Molecular weight: 7.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

29

0

29

9891

67

1079

341.1

38.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.451 ± 0.497

2.396 ± 0.43

4.802 ± 0.345

5.136 ± 0.396

4.459 ± 0.255

5.732 ± 0.549

2.204 ± 0.216

5.49 ± 0.288

4.671 ± 0.557

9.837 ± 0.396

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.022 ± 0.179

5.348 ± 0.403

6.036 ± 0.302

3.923 ± 0.278

5.763 ± 0.599

6.541 ± 0.235

6.855 ± 0.452

6.066 ± 0.376

1.415 ± 0.15

3.852 ± 0.302
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski