Amino acid dipepetide frequency for Colletotrichum camelliae filamentous virus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
10.949AlaAla: 10.949 ± 1.758
1.217AlaCys: 1.217 ± 0.538
5.17AlaAsp: 5.17 ± 1.313
2.737AlaGlu: 2.737 ± 0.761
5.17AlaPhe: 5.17 ± 1.054
6.387AlaGly: 6.387 ± 0.86
2.433AlaHis: 2.433 ± 0.705
3.345AlaIle: 3.345 ± 0.943
3.65AlaLys: 3.65 ± 1.098
6.691AlaLeu: 6.691 ± 1.409
1.825AlaMet: 1.825 ± 0.572
3.954AlaAsn: 3.954 ± 0.867
7.603AlaPro: 7.603 ± 2.053
3.041AlaGln: 3.041 ± 0.577
10.036AlaArg: 10.036 ± 2.541
7.908AlaSer: 7.908 ± 1.109
8.516AlaThr: 8.516 ± 1.986
8.516AlaVal: 8.516 ± 1.583
0.304AlaTrp: 0.304 ± 0.255
1.825AlaTyr: 1.825 ± 0.425
0.0AlaXaa: 0.0 ± 0.0
Cys
1.217CysAla: 1.217 ± 1.029
0.0CysCys: 0.0 ± 0.0
0.304CysAsp: 0.304 ± 0.255
1.217CysGlu: 1.217 ± 0.375
0.304CysPhe: 0.304 ± 0.399
0.608CysGly: 0.608 ± 0.404
0.304CysHis: 0.304 ± 0.276
0.912CysIle: 0.912 ± 0.462
0.0CysLys: 0.0 ± 0.0
2.433CysLeu: 2.433 ± 1.043
1.217CysMet: 1.217 ± 0.543
0.304CysAsn: 0.304 ± 0.276
0.608CysPro: 0.608 ± 0.298
0.304CysGln: 0.304 ± 0.276
0.912CysArg: 0.912 ± 0.593
0.912CysSer: 0.912 ± 0.52
1.217CysThr: 1.217 ± 0.611
1.521CysVal: 1.521 ± 0.569
0.304CysTrp: 0.304 ± 0.399
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
7.299AspAla: 7.299 ± 1.815
0.304AspCys: 0.304 ± 0.255
4.562AspAsp: 4.562 ± 1.719
5.474AspGlu: 5.474 ± 0.703
2.129AspPhe: 2.129 ± 0.558
4.562AspGly: 4.562 ± 1.663
0.304AspHis: 0.304 ± 0.276
0.912AspIle: 0.912 ± 0.37
2.129AspLys: 2.129 ± 0.853
7.299AspLeu: 7.299 ± 1.548
2.433AspMet: 2.433 ± 1.277
1.217AspAsn: 1.217 ± 0.521
5.17AspPro: 5.17 ± 0.953
0.912AspGln: 0.912 ± 0.565
4.258AspArg: 4.258 ± 1.346
4.562AspSer: 4.562 ± 1.516
2.129AspThr: 2.129 ± 0.727
9.124AspVal: 9.124 ± 2.422
1.217AspTrp: 1.217 ± 0.539
2.433AspTyr: 2.433 ± 0.751
0.0AspXaa: 0.0 ± 0.0
Glu
3.345GluAla: 3.345 ± 1.007
0.304GluCys: 0.304 ± 0.439
2.433GluAsp: 2.433 ± 0.678
3.041GluGlu: 3.041 ± 0.986
1.825GluPhe: 1.825 ± 0.547
3.041GluGly: 3.041 ± 1.133
1.217GluHis: 1.217 ± 0.463
1.825GluIle: 1.825 ± 0.909
2.433GluLys: 2.433 ± 0.851
2.433GluLeu: 2.433 ± 1.007
0.304GluMet: 0.304 ± 0.568
0.608GluAsn: 0.608 ± 0.425
2.737GluPro: 2.737 ± 0.728
0.608GluGln: 0.608 ± 0.38
3.65GluArg: 3.65 ± 0.981
2.737GluSer: 2.737 ± 0.742
2.737GluThr: 2.737 ± 0.703
6.083GluVal: 6.083 ± 1.118
1.217GluTrp: 1.217 ± 0.606
1.521GluTyr: 1.521 ± 0.464
0.0GluXaa: 0.0 ± 0.0
Phe
2.433PheAla: 2.433 ± 0.676
1.217PheCys: 1.217 ± 0.724
2.737PheAsp: 2.737 ± 1.455
2.433PheGlu: 2.433 ± 0.626
2.737PhePhe: 2.737 ± 1.53
5.17PheGly: 5.17 ± 1.713
0.304PheHis: 0.304 ± 0.255
1.217PheIle: 1.217 ± 0.586
0.304PheLys: 0.304 ± 0.255
2.737PheLeu: 2.737 ± 0.776
0.608PheMet: 0.608 ± 0.51
0.912PheAsn: 0.912 ± 0.429
1.217PhePro: 1.217 ± 0.632
0.608PheGln: 0.608 ± 0.404
1.521PheArg: 1.521 ± 0.708
3.041PheSer: 3.041 ± 1.191
1.825PheThr: 1.825 ± 0.597
3.954PheVal: 3.954 ± 0.846
0.0PheTrp: 0.0 ± 0.0
0.912PheTyr: 0.912 ± 0.514
0.0PheXaa: 0.0 ± 0.0
Gly
8.212GlyAla: 8.212 ± 2.324
0.912GlyCys: 0.912 ± 0.44
5.474GlyAsp: 5.474 ± 0.938
3.345GlyGlu: 3.345 ± 0.951
3.345GlyPhe: 3.345 ± 1.047
5.474GlyGly: 5.474 ± 1.113
0.608GlyHis: 0.608 ± 0.404
1.825GlyIle: 1.825 ± 0.648
3.345GlyLys: 3.345 ± 1.243
5.779GlyLeu: 5.779 ± 1.189
1.825GlyMet: 1.825 ± 0.493
1.825GlyAsn: 1.825 ± 0.561
4.866GlyPro: 4.866 ± 1.233
2.129GlyGln: 2.129 ± 0.499
8.516GlyArg: 8.516 ± 2.268
7.603GlySer: 7.603 ± 1.929
1.825GlyThr: 1.825 ± 0.83
10.341GlyVal: 10.341 ± 1.924
0.608GlyTrp: 0.608 ± 0.488
1.521GlyTyr: 1.521 ± 0.686
0.0GlyXaa: 0.0 ± 0.0
His
2.129HisAla: 2.129 ± 0.974
0.304HisCys: 0.304 ± 0.255
0.912HisAsp: 0.912 ± 0.574
1.521HisGlu: 1.521 ± 0.344
0.0HisPhe: 0.0 ± 0.0
1.217HisGly: 1.217 ± 0.548
0.608HisHis: 0.608 ± 0.382
0.304HisIle: 0.304 ± 0.399
0.608HisLys: 0.608 ± 0.46
1.521HisLeu: 1.521 ± 0.526
0.304HisMet: 0.304 ± 0.276
0.304HisAsn: 0.304 ± 0.276
2.433HisPro: 2.433 ± 0.824
0.608HisGln: 0.608 ± 0.551
1.217HisArg: 1.217 ± 0.764
3.041HisSer: 3.041 ± 0.64
0.304HisThr: 0.304 ± 0.329
1.825HisVal: 1.825 ± 0.626
0.0HisTrp: 0.0 ± 0.0
0.608HisTyr: 0.608 ± 0.382
0.0HisXaa: 0.0 ± 0.0
Ile
2.129IleAla: 2.129 ± 0.95
0.304IleCys: 0.304 ± 0.255
1.825IleAsp: 1.825 ± 0.708
0.608IleGlu: 0.608 ± 0.306
0.608IlePhe: 0.608 ± 0.521
1.825IleGly: 1.825 ± 0.831
0.304IleHis: 0.304 ± 0.261
0.912IleIle: 0.912 ± 0.462
0.608IleLys: 0.608 ± 0.404
1.521IleLeu: 1.521 ± 0.605
0.912IleMet: 0.912 ± 0.551
0.304IleAsn: 0.304 ± 0.261
1.825IlePro: 1.825 ± 1.03
0.608IleGln: 0.608 ± 0.556
1.217IleArg: 1.217 ± 0.567
3.345IleSer: 3.345 ± 1.036
1.825IleThr: 1.825 ± 0.575
3.954IleVal: 3.954 ± 1.029
0.304IleTrp: 0.304 ± 0.358
1.217IleTyr: 1.217 ± 0.655
0.0IleXaa: 0.0 ± 0.0
Lys
2.433LysAla: 2.433 ± 0.819
0.0LysCys: 0.0 ± 0.0
2.433LysAsp: 2.433 ± 0.954
0.608LysGlu: 0.608 ± 0.306
0.608LysPhe: 0.608 ± 0.46
1.521LysGly: 1.521 ± 0.616
0.608LysHis: 0.608 ± 0.51
0.608LysIle: 0.608 ± 0.38
0.912LysLys: 0.912 ± 0.464
3.954LysLeu: 3.954 ± 2.103
0.912LysMet: 0.912 ± 0.401
0.304LysAsn: 0.304 ± 0.261
1.521LysPro: 1.521 ± 1.021
0.0LysGln: 0.0 ± 0.0
1.217LysArg: 1.217 ± 0.312
1.521LysSer: 1.521 ± 0.421
2.129LysThr: 2.129 ± 0.928
3.954LysVal: 3.954 ± 0.956
0.608LysTrp: 0.608 ± 0.521
0.304LysTyr: 0.304 ± 0.261
0.0LysXaa: 0.0 ± 0.0
Leu
7.908LeuAla: 7.908 ± 1.944
1.217LeuCys: 1.217 ± 0.693
6.083LeuAsp: 6.083 ± 1.465
4.866LeuGlu: 4.866 ± 1.151
1.825LeuPhe: 1.825 ± 0.648
4.562LeuGly: 4.562 ± 0.758
1.521LeuHis: 1.521 ± 0.871
1.825LeuIle: 1.825 ± 1.025
1.825LeuLys: 1.825 ± 0.557
8.516LeuLeu: 8.516 ± 1.209
2.737LeuMet: 2.737 ± 0.951
2.129LeuAsn: 2.129 ± 0.563
4.866LeuPro: 4.866 ± 1.352
1.217LeuGln: 1.217 ± 0.472
10.341LeuArg: 10.341 ± 0.999
7.908LeuSer: 7.908 ± 1.634
3.954LeuThr: 3.954 ± 1.325
6.995LeuVal: 6.995 ± 1.17
0.608LeuTrp: 0.608 ± 0.658
3.041LeuTyr: 3.041 ± 0.68
0.0LeuXaa: 0.0 ± 0.0
Met
2.433MetAla: 2.433 ± 0.698
0.912MetCys: 0.912 ± 0.497
2.129MetAsp: 2.129 ± 0.643
1.217MetGlu: 1.217 ± 0.553
0.0MetPhe: 0.0 ± 0.0
1.217MetGly: 1.217 ± 0.583
0.304MetHis: 0.304 ± 0.276
0.304MetIle: 0.304 ± 0.255
0.0MetLys: 0.0 ± 0.0
2.129MetLeu: 2.129 ± 0.621
1.217MetMet: 1.217 ± 0.569
0.304MetAsn: 0.304 ± 0.255
2.129MetPro: 2.129 ± 0.789
0.304MetGln: 0.304 ± 0.261
2.737MetArg: 2.737 ± 0.839
3.345MetSer: 3.345 ± 0.989
1.825MetThr: 1.825 ± 0.911
2.129MetVal: 2.129 ± 0.856
0.304MetTrp: 0.304 ± 0.329
0.304MetTyr: 0.304 ± 0.439
0.0MetXaa: 0.0 ± 0.0
Asn
1.825AsnAla: 1.825 ± 0.91
0.608AsnCys: 0.608 ± 0.556
0.912AsnAsp: 0.912 ± 0.37
0.304AsnGlu: 0.304 ± 0.399
1.217AsnPhe: 1.217 ± 0.583
0.912AsnGly: 0.912 ± 0.531
0.608AsnHis: 0.608 ± 0.485
0.0AsnIle: 0.0 ± 0.0
0.912AsnLys: 0.912 ± 0.386
3.041AsnLeu: 3.041 ± 0.781
1.825AsnMet: 1.825 ± 0.504
0.0AsnAsn: 0.0 ± 0.0
2.433AsnPro: 2.433 ± 0.977
0.608AsnGln: 0.608 ± 0.521
2.129AsnArg: 2.129 ± 0.605
1.217AsnSer: 1.217 ± 0.696
1.825AsnThr: 1.825 ± 0.94
3.65AsnVal: 3.65 ± 1.219
0.0AsnTrp: 0.0 ± 0.0
0.608AsnTyr: 0.608 ± 0.332
0.0AsnXaa: 0.0 ± 0.0
Pro
7.299ProAla: 7.299 ± 1.728
0.608ProCys: 0.608 ± 0.352
6.083ProAsp: 6.083 ± 1.027
2.737ProGlu: 2.737 ± 1.082
1.521ProPhe: 1.521 ± 0.88
8.82ProGly: 8.82 ± 0.894
0.608ProHis: 0.608 ± 0.306
0.912ProIle: 0.912 ± 0.289
1.825ProLys: 1.825 ± 0.642
4.562ProLeu: 4.562 ± 0.767
0.608ProMet: 0.608 ± 0.298
1.521ProAsn: 1.521 ± 0.699
6.083ProPro: 6.083 ± 1.932
0.304ProGln: 0.304 ± 0.31
7.908ProArg: 7.908 ± 1.736
8.212ProSer: 8.212 ± 3.667
3.041ProThr: 3.041 ± 0.945
3.041ProVal: 3.041 ± 0.795
0.608ProTrp: 0.608 ± 0.306
0.912ProTyr: 0.912 ± 0.388
0.0ProXaa: 0.0 ± 0.0
Gln
1.217GlnAla: 1.217 ± 0.758
0.304GlnCys: 0.304 ± 0.276
1.521GlnAsp: 1.521 ± 0.62
0.304GlnGlu: 0.304 ± 0.255
1.217GlnPhe: 1.217 ± 0.606
2.737GlnGly: 2.737 ± 1.377
0.0GlnHis: 0.0 ± 0.0
0.304GlnIle: 0.304 ± 0.255
0.912GlnLys: 0.912 ± 0.551
2.129GlnLeu: 2.129 ± 1.541
0.608GlnMet: 0.608 ± 0.38
0.0GlnAsn: 0.0 ± 0.0
0.304GlnPro: 0.304 ± 0.261
0.304GlnGln: 0.304 ± 0.261
1.825GlnArg: 1.825 ± 0.676
1.825GlnSer: 1.825 ± 0.759
0.912GlnThr: 0.912 ± 0.559
0.608GlnVal: 0.608 ± 0.425
0.0GlnTrp: 0.0 ± 0.0
0.608GlnTyr: 0.608 ± 0.556
0.0GlnXaa: 0.0 ± 0.0
Arg
8.516ArgAla: 8.516 ± 1.966
2.129ArgCys: 2.129 ± 0.708
7.299ArgAsp: 7.299 ± 0.911
3.345ArgGlu: 3.345 ± 1.118
4.562ArgPhe: 4.562 ± 1.456
6.691ArgGly: 6.691 ± 0.803
2.737ArgHis: 2.737 ± 1.003
2.737ArgIle: 2.737 ± 1.04
1.825ArgLys: 1.825 ± 1.103
5.17ArgLeu: 5.17 ± 1.198
1.825ArgMet: 1.825 ± 0.854
2.737ArgAsn: 2.737 ± 0.445
5.779ArgPro: 5.779 ± 2.027
1.521ArgGln: 1.521 ± 0.751
6.995ArgArg: 6.995 ± 1.807
8.516ArgSer: 8.516 ± 1.972
4.258ArgThr: 4.258 ± 0.455
7.603ArgVal: 7.603 ± 1.214
0.304ArgTrp: 0.304 ± 0.255
2.433ArgTyr: 2.433 ± 1.426
0.0ArgXaa: 0.0 ± 0.0
Ser
10.036SerAla: 10.036 ± 1.721
0.912SerCys: 0.912 ± 0.518
4.562SerAsp: 4.562 ± 1.273
2.129SerGlu: 2.129 ± 1.014
4.258SerPhe: 4.258 ± 1.149
6.995SerGly: 6.995 ± 1.675
3.65SerHis: 3.65 ± 1.829
1.217SerIle: 1.217 ± 0.597
2.129SerLys: 2.129 ± 0.887
9.428SerLeu: 9.428 ± 1.59
0.912SerMet: 0.912 ± 0.54
2.737SerAsn: 2.737 ± 1.276
3.65SerPro: 3.65 ± 0.86
1.217SerGln: 1.217 ± 0.543
10.949SerArg: 10.949 ± 2.423
7.299SerSer: 7.299 ± 1.922
3.65SerThr: 3.65 ± 1.605
9.124SerVal: 9.124 ± 2.616
0.608SerTrp: 0.608 ± 0.404
3.345SerTyr: 3.345 ± 1.162
0.0SerXaa: 0.0 ± 0.0
Thr
6.387ThrAla: 6.387 ± 1.546
0.304ThrCys: 0.304 ± 0.255
3.041ThrAsp: 3.041 ± 0.543
1.521ThrGlu: 1.521 ± 0.644
1.521ThrPhe: 1.521 ± 0.736
5.779ThrGly: 5.779 ± 1.239
0.912ThrHis: 0.912 ± 0.518
2.433ThrIle: 2.433 ± 0.415
0.304ThrLys: 0.304 ± 0.261
4.866ThrLeu: 4.866 ± 1.057
2.433ThrMet: 2.433 ± 0.767
0.608ThrAsn: 0.608 ± 0.481
4.562ThrPro: 4.562 ± 0.892
1.825ThrGln: 1.825 ± 0.73
4.562ThrArg: 4.562 ± 1.121
3.041ThrSer: 3.041 ± 0.685
4.562ThrThr: 4.562 ± 1.018
4.562ThrVal: 4.562 ± 1.054
0.304ThrTrp: 0.304 ± 0.31
0.608ThrTyr: 0.608 ± 0.577
0.0ThrXaa: 0.0 ± 0.0
Val
11.253ValAla: 11.253 ± 1.706
2.737ValCys: 2.737 ± 1.217
8.212ValAsp: 8.212 ± 0.867
5.474ValGlu: 5.474 ± 1.02
2.129ValPhe: 2.129 ± 0.908
8.82ValGly: 8.82 ± 1.523
2.129ValHis: 2.129 ± 0.652
3.041ValIle: 3.041 ± 2.068
2.129ValLys: 2.129 ± 0.815
7.299ValLeu: 7.299 ± 1.151
2.433ValMet: 2.433 ± 0.693
3.041ValAsn: 3.041 ± 1.132
8.212ValPro: 8.212 ± 1.336
1.217ValGln: 1.217 ± 0.525
5.779ValArg: 5.779 ± 1.598
8.82ValSer: 8.82 ± 1.439
3.954ValThr: 3.954 ± 1.11
10.949ValVal: 10.949 ± 2.134
1.521ValTrp: 1.521 ± 0.929
2.129ValTyr: 2.129 ± 0.9
0.0ValXaa: 0.0 ± 0.0
Trp
1.217TrpAla: 1.217 ± 0.636
0.0TrpCys: 0.0 ± 0.0
0.608TrpAsp: 0.608 ± 0.521
0.0TrpGlu: 0.0 ± 0.0
0.304TrpPhe: 0.304 ± 0.399
0.608TrpGly: 0.608 ± 0.51
0.304TrpHis: 0.304 ± 0.276
0.608TrpIle: 0.608 ± 0.298
0.0TrpLys: 0.0 ± 0.0
0.912TrpLeu: 0.912 ± 0.464
0.0TrpMet: 0.0 ± 0.0
0.608TrpAsn: 0.608 ± 0.582
0.304TrpPro: 0.304 ± 0.276
0.0TrpGln: 0.0 ± 0.0
0.608TrpArg: 0.608 ± 0.46
0.912TrpSer: 0.912 ± 0.466
0.608TrpThr: 0.608 ± 0.577
1.217TrpVal: 1.217 ± 0.548
0.304TrpTrp: 0.304 ± 0.411
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.041TyrAla: 3.041 ± 1.14
0.304TyrCys: 0.304 ± 0.261
2.129TyrAsp: 2.129 ± 0.885
1.521TyrGlu: 1.521 ± 1.122
0.608TyrPhe: 0.608 ± 0.298
2.433TyrGly: 2.433 ± 0.595
0.304TyrHis: 0.304 ± 0.439
0.912TyrIle: 0.912 ± 0.718
0.304TyrLys: 0.304 ± 0.261
1.521TyrLeu: 1.521 ± 0.494
0.0TyrMet: 0.0 ± 0.0
1.217TyrAsn: 1.217 ± 0.724
0.912TyrPro: 0.912 ± 0.822
0.304TyrGln: 0.304 ± 0.358
0.608TyrArg: 0.608 ± 0.332
3.041TyrSer: 3.041 ± 0.961
3.041TyrThr: 3.041 ± 0.698
2.129TyrVal: 2.129 ± 0.469
0.0TyrTrp: 0.0 ± 0.0
0.912TyrTyr: 0.912 ± 0.37
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 9 proteins (3289 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski