Amino acid dipepetide frequency for Botrytis cinerea betaendornavirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.434AlaAla: 3.434 ± 0.0
0.528AlaCys: 0.528 ± 0.0
3.17AlaAsp: 3.17 ± 0.0
2.113AlaGlu: 2.113 ± 0.0
1.321AlaPhe: 1.321 ± 0.0
1.849AlaGly: 1.849 ± 0.0
1.849AlaHis: 1.849 ± 0.0
6.603AlaIle: 6.603 ± 0.0
3.17AlaLys: 3.17 ± 0.0
4.226AlaLeu: 4.226 ± 0.0
1.321AlaMet: 1.321 ± 0.0
2.113AlaAsn: 2.113 ± 0.0
1.585AlaPro: 1.585 ± 0.0
1.585AlaGln: 1.585 ± 0.0
2.113AlaArg: 2.113 ± 0.0
3.962AlaSer: 3.962 ± 0.0
3.698AlaThr: 3.698 ± 0.0
2.377AlaVal: 2.377 ± 0.0
0.264AlaTrp: 0.264 ± 0.0
1.849AlaTyr: 1.849 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.321CysAla: 1.321 ± 0.0
1.057CysCys: 1.057 ± 0.0
1.585CysAsp: 1.585 ± 0.0
1.057CysGlu: 1.057 ± 0.0
0.0CysPhe: 0.0 ± 0.0
1.057CysGly: 1.057 ± 0.0
0.528CysHis: 0.528 ± 0.0
0.264CysIle: 0.264 ± 0.0
1.321CysLys: 1.321 ± 0.0
1.321CysLeu: 1.321 ± 0.0
0.0CysMet: 0.0 ± 0.0
1.057CysAsn: 1.057 ± 0.0
1.057CysPro: 1.057 ± 0.0
0.528CysGln: 0.528 ± 0.0
0.528CysArg: 0.528 ± 0.0
2.377CysSer: 2.377 ± 0.0
1.057CysThr: 1.057 ± 0.0
1.321CysVal: 1.321 ± 0.0
0.528CysTrp: 0.528 ± 0.0
0.528CysTyr: 0.528 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.641AspAla: 2.641 ± 0.0
1.057AspCys: 1.057 ± 0.0
4.226AspAsp: 4.226 ± 0.0
4.754AspGlu: 4.754 ± 0.0
2.113AspPhe: 2.113 ± 0.0
3.698AspGly: 3.698 ± 0.0
1.849AspHis: 1.849 ± 0.0
5.283AspIle: 5.283 ± 0.0
3.434AspLys: 3.434 ± 0.0
5.811AspLeu: 5.811 ± 0.0
2.113AspMet: 2.113 ± 0.0
5.547AspAsn: 5.547 ± 0.0
1.585AspPro: 1.585 ± 0.0
0.792AspGln: 0.792 ± 0.0
1.585AspArg: 1.585 ± 0.0
4.49AspSer: 4.49 ± 0.0
5.018AspThr: 5.018 ± 0.0
2.377AspVal: 2.377 ± 0.0
1.321AspTrp: 1.321 ± 0.0
2.905AspTyr: 2.905 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
1.585GluAla: 1.585 ± 0.0
0.792GluCys: 0.792 ± 0.0
2.113GluAsp: 2.113 ± 0.0
1.849GluGlu: 1.849 ± 0.0
3.17GluPhe: 3.17 ± 0.0
1.321GluGly: 1.321 ± 0.0
1.849GluHis: 1.849 ± 0.0
3.962GluIle: 3.962 ± 0.0
3.434GluLys: 3.434 ± 0.0
3.962GluLeu: 3.962 ± 0.0
1.585GluMet: 1.585 ± 0.0
2.377GluAsn: 2.377 ± 0.0
1.849GluPro: 1.849 ± 0.0
1.057GluGln: 1.057 ± 0.0
1.585GluArg: 1.585 ± 0.0
3.434GluSer: 3.434 ± 0.0
3.962GluThr: 3.962 ± 0.0
2.641GluVal: 2.641 ± 0.0
1.321GluTrp: 1.321 ± 0.0
1.321GluTyr: 1.321 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
1.057PheAla: 1.057 ± 0.0
0.264PheCys: 0.264 ± 0.0
2.377PheAsp: 2.377 ± 0.0
1.321PheGlu: 1.321 ± 0.0
0.528PhePhe: 0.528 ± 0.0
3.434PheGly: 3.434 ± 0.0
0.792PheHis: 0.792 ± 0.0
2.905PheIle: 2.905 ± 0.0
2.641PheLys: 2.641 ± 0.0
1.057PheLeu: 1.057 ± 0.0
2.113PheMet: 2.113 ± 0.0
4.754PheAsn: 4.754 ± 0.0
1.057PhePro: 1.057 ± 0.0
0.528PheGln: 0.528 ± 0.0
0.264PheArg: 0.264 ± 0.0
3.434PheSer: 3.434 ± 0.0
1.849PheThr: 1.849 ± 0.0
2.113PheVal: 2.113 ± 0.0
0.0PheTrp: 0.0 ± 0.0
1.057PheTyr: 1.057 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
3.17GlyAla: 3.17 ± 0.0
0.528GlyCys: 0.528 ± 0.0
1.585GlyAsp: 1.585 ± 0.0
1.321GlyGlu: 1.321 ± 0.0
1.585GlyPhe: 1.585 ± 0.0
3.962GlyGly: 3.962 ± 0.0
2.905GlyHis: 2.905 ± 0.0
2.641GlyIle: 2.641 ± 0.0
4.754GlyLys: 4.754 ± 0.0
6.075GlyLeu: 6.075 ± 0.0
1.321GlyMet: 1.321 ± 0.0
4.754GlyAsn: 4.754 ± 0.0
1.585GlyPro: 1.585 ± 0.0
1.057GlyGln: 1.057 ± 0.0
2.113GlyArg: 2.113 ± 0.0
3.17GlySer: 3.17 ± 0.0
3.434GlyThr: 3.434 ± 0.0
2.905GlyVal: 2.905 ± 0.0
0.264GlyTrp: 0.264 ± 0.0
2.905GlyTyr: 2.905 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
0.792HisAla: 0.792 ± 0.0
0.528HisCys: 0.528 ± 0.0
1.321HisAsp: 1.321 ± 0.0
0.792HisGlu: 0.792 ± 0.0
1.321HisPhe: 1.321 ± 0.0
1.585HisGly: 1.585 ± 0.0
0.528HisHis: 0.528 ± 0.0
2.377HisIle: 2.377 ± 0.0
1.057HisLys: 1.057 ± 0.0
2.377HisLeu: 2.377 ± 0.0
0.792HisMet: 0.792 ± 0.0
3.434HisAsn: 3.434 ± 0.0
0.528HisPro: 0.528 ± 0.0
0.0HisGln: 0.0 ± 0.0
0.528HisArg: 0.528 ± 0.0
3.962HisSer: 3.962 ± 0.0
3.434HisThr: 3.434 ± 0.0
2.641HisVal: 2.641 ± 0.0
0.528HisTrp: 0.528 ± 0.0
1.585HisTyr: 1.585 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
5.018IleAla: 5.018 ± 0.0
1.585IleCys: 1.585 ± 0.0
4.49IleAsp: 4.49 ± 0.0
3.962IleGlu: 3.962 ± 0.0
2.377IlePhe: 2.377 ± 0.0
5.547IleGly: 5.547 ± 0.0
1.321IleHis: 1.321 ± 0.0
5.018IleIle: 5.018 ± 0.0
3.962IleLys: 3.962 ± 0.0
5.018IleLeu: 5.018 ± 0.0
3.17IleMet: 3.17 ± 0.0
8.188IleAsn: 8.188 ± 0.0
1.849IlePro: 1.849 ± 0.0
1.321IleGln: 1.321 ± 0.0
2.377IleArg: 2.377 ± 0.0
6.867IleSer: 6.867 ± 0.0
6.075IleThr: 6.075 ± 0.0
5.018IleVal: 5.018 ± 0.0
0.0IleTrp: 0.0 ± 0.0
2.905IleTyr: 2.905 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
2.377LysAla: 2.377 ± 0.0
1.585LysCys: 1.585 ± 0.0
3.434LysAsp: 3.434 ± 0.0
1.849LysGlu: 1.849 ± 0.0
2.377LysPhe: 2.377 ± 0.0
1.321LysGly: 1.321 ± 0.0
2.113LysHis: 2.113 ± 0.0
5.811LysIle: 5.811 ± 0.0
4.754LysLys: 4.754 ± 0.0
8.452LysLeu: 8.452 ± 0.0
2.377LysMet: 2.377 ± 0.0
5.283LysAsn: 5.283 ± 0.0
3.17LysPro: 3.17 ± 0.0
2.377LysGln: 2.377 ± 0.0
1.849LysArg: 1.849 ± 0.0
5.283LysSer: 5.283 ± 0.0
5.811LysThr: 5.811 ± 0.0
2.113LysVal: 2.113 ± 0.0
1.585LysTrp: 1.585 ± 0.0
2.641LysTyr: 2.641 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
2.377LeuAla: 2.377 ± 0.0
2.377LeuCys: 2.377 ± 0.0
3.962LeuAsp: 3.962 ± 0.0
6.075LeuGlu: 6.075 ± 0.0
3.434LeuPhe: 3.434 ± 0.0
5.283LeuGly: 5.283 ± 0.0
2.641LeuHis: 2.641 ± 0.0
8.716LeuIle: 8.716 ± 0.0
4.49LeuLys: 4.49 ± 0.0
8.98LeuLeu: 8.98 ± 0.0
3.17LeuMet: 3.17 ± 0.0
5.018LeuAsn: 5.018 ± 0.0
4.49LeuPro: 4.49 ± 0.0
1.849LeuGln: 1.849 ± 0.0
2.377LeuArg: 2.377 ± 0.0
5.283LeuSer: 5.283 ± 0.0
5.547LeuThr: 5.547 ± 0.0
5.811LeuVal: 5.811 ± 0.0
0.528LeuTrp: 0.528 ± 0.0
3.434LeuTyr: 3.434 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
1.321MetAla: 1.321 ± 0.0
0.0MetCys: 0.0 ± 0.0
1.585MetAsp: 1.585 ± 0.0
0.528MetGlu: 0.528 ± 0.0
1.057MetPhe: 1.057 ± 0.0
1.057MetGly: 1.057 ± 0.0
1.321MetHis: 1.321 ± 0.0
2.641MetIle: 2.641 ± 0.0
1.057MetLys: 1.057 ± 0.0
4.226MetLeu: 4.226 ± 0.0
0.792MetMet: 0.792 ± 0.0
1.321MetAsn: 1.321 ± 0.0
1.585MetPro: 1.585 ± 0.0
0.792MetGln: 0.792 ± 0.0
1.321MetArg: 1.321 ± 0.0
3.17MetSer: 3.17 ± 0.0
3.698MetThr: 3.698 ± 0.0
1.849MetVal: 1.849 ± 0.0
0.528MetTrp: 0.528 ± 0.0
1.849MetTyr: 1.849 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
5.018AsnAla: 5.018 ± 0.0
1.057AsnCys: 1.057 ± 0.0
8.188AsnAsp: 8.188 ± 0.0
5.283AsnGlu: 5.283 ± 0.0
2.113AsnPhe: 2.113 ± 0.0
4.226AsnGly: 4.226 ± 0.0
1.321AsnHis: 1.321 ± 0.0
6.603AsnIle: 6.603 ± 0.0
7.66AsnLys: 7.66 ± 0.0
5.283AsnLeu: 5.283 ± 0.0
1.849AsnMet: 1.849 ± 0.0
7.924AsnAsn: 7.924 ± 0.0
1.849AsnPro: 1.849 ± 0.0
1.585AsnGln: 1.585 ± 0.0
2.377AsnArg: 2.377 ± 0.0
5.018AsnSer: 5.018 ± 0.0
6.075AsnThr: 6.075 ± 0.0
6.603AsnVal: 6.603 ± 0.0
1.057AsnTrp: 1.057 ± 0.0
3.698AsnTyr: 3.698 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
1.321ProAla: 1.321 ± 0.0
0.792ProCys: 0.792 ± 0.0
2.377ProAsp: 2.377 ± 0.0
2.641ProGlu: 2.641 ± 0.0
0.792ProPhe: 0.792 ± 0.0
2.113ProGly: 2.113 ± 0.0
1.321ProHis: 1.321 ± 0.0
1.585ProIle: 1.585 ± 0.0
1.585ProLys: 1.585 ± 0.0
2.905ProLeu: 2.905 ± 0.0
0.264ProMet: 0.264 ± 0.0
2.905ProAsn: 2.905 ± 0.0
0.792ProPro: 0.792 ± 0.0
0.528ProGln: 0.528 ± 0.0
1.321ProArg: 1.321 ± 0.0
3.17ProSer: 3.17 ± 0.0
3.17ProThr: 3.17 ± 0.0
1.849ProVal: 1.849 ± 0.0
0.0ProTrp: 0.0 ± 0.0
1.057ProTyr: 1.057 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
1.321GlnAla: 1.321 ± 0.0
0.528GlnCys: 0.528 ± 0.0
1.849GlnAsp: 1.849 ± 0.0
0.792GlnGlu: 0.792 ± 0.0
1.057GlnPhe: 1.057 ± 0.0
0.528GlnGly: 0.528 ± 0.0
0.792GlnHis: 0.792 ± 0.0
0.792GlnIle: 0.792 ± 0.0
0.528GlnLys: 0.528 ± 0.0
2.377GlnLeu: 2.377 ± 0.0
1.585GlnMet: 1.585 ± 0.0
1.321GlnAsn: 1.321 ± 0.0
1.849GlnPro: 1.849 ± 0.0
1.585GlnGln: 1.585 ± 0.0
1.321GlnArg: 1.321 ± 0.0
3.17GlnSer: 3.17 ± 0.0
1.585GlnThr: 1.585 ± 0.0
1.057GlnVal: 1.057 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
1.321ArgAla: 1.321 ± 0.0
0.792ArgCys: 0.792 ± 0.0
1.849ArgAsp: 1.849 ± 0.0
2.641ArgGlu: 2.641 ± 0.0
1.849ArgPhe: 1.849 ± 0.0
1.585ArgGly: 1.585 ± 0.0
1.321ArgHis: 1.321 ± 0.0
2.113ArgIle: 2.113 ± 0.0
1.849ArgLys: 1.849 ± 0.0
3.17ArgLeu: 3.17 ± 0.0
0.528ArgMet: 0.528 ± 0.0
2.113ArgAsn: 2.113 ± 0.0
0.528ArgPro: 0.528 ± 0.0
1.321ArgGln: 1.321 ± 0.0
0.792ArgArg: 0.792 ± 0.0
3.962ArgSer: 3.962 ± 0.0
0.528ArgThr: 0.528 ± 0.0
3.962ArgVal: 3.962 ± 0.0
0.264ArgTrp: 0.264 ± 0.0
0.528ArgTyr: 0.528 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
4.226SerAla: 4.226 ± 0.0
0.264SerCys: 0.264 ± 0.0
5.811SerAsp: 5.811 ± 0.0
3.17SerGlu: 3.17 ± 0.0
2.377SerPhe: 2.377 ± 0.0
5.018SerGly: 5.018 ± 0.0
2.377SerHis: 2.377 ± 0.0
7.132SerIle: 7.132 ± 0.0
5.811SerLys: 5.811 ± 0.0
7.132SerLeu: 7.132 ± 0.0
3.17SerMet: 3.17 ± 0.0
8.188SerAsn: 8.188 ± 0.0
1.057SerPro: 1.057 ± 0.0
1.849SerGln: 1.849 ± 0.0
3.698SerArg: 3.698 ± 0.0
5.811SerSer: 5.811 ± 0.0
6.867SerThr: 6.867 ± 0.0
5.811SerVal: 5.811 ± 0.0
1.057SerTrp: 1.057 ± 0.0
3.434SerTyr: 3.434 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
3.698ThrAla: 3.698 ± 0.0
1.585ThrCys: 1.585 ± 0.0
4.754ThrAsp: 4.754 ± 0.0
1.321ThrGlu: 1.321 ± 0.0
2.905ThrPhe: 2.905 ± 0.0
3.434ThrGly: 3.434 ± 0.0
1.849ThrHis: 1.849 ± 0.0
6.339ThrIle: 6.339 ± 0.0
5.018ThrLys: 5.018 ± 0.0
7.132ThrLeu: 7.132 ± 0.0
2.641ThrMet: 2.641 ± 0.0
6.867ThrAsn: 6.867 ± 0.0
2.377ThrPro: 2.377 ± 0.0
2.905ThrGln: 2.905 ± 0.0
2.377ThrArg: 2.377 ± 0.0
7.396ThrSer: 7.396 ± 0.0
7.396ThrThr: 7.396 ± 0.0
3.698ThrVal: 3.698 ± 0.0
1.057ThrTrp: 1.057 ± 0.0
3.434ThrTyr: 3.434 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
2.641ValAla: 2.641 ± 0.0
2.113ValCys: 2.113 ± 0.0
3.962ValAsp: 3.962 ± 0.0
1.321ValGlu: 1.321 ± 0.0
1.057ValPhe: 1.057 ± 0.0
3.698ValGly: 3.698 ± 0.0
2.377ValHis: 2.377 ± 0.0
3.698ValIle: 3.698 ± 0.0
4.226ValLys: 4.226 ± 0.0
2.905ValLeu: 2.905 ± 0.0
1.849ValMet: 1.849 ± 0.0
7.132ValAsn: 7.132 ± 0.0
2.113ValPro: 2.113 ± 0.0
0.792ValGln: 0.792 ± 0.0
2.113ValArg: 2.113 ± 0.0
5.547ValSer: 5.547 ± 0.0
5.018ValThr: 5.018 ± 0.0
2.641ValVal: 2.641 ± 0.0
1.057ValTrp: 1.057 ± 0.0
3.962ValTyr: 3.962 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.792TrpAla: 0.792 ± 0.0
0.264TrpCys: 0.264 ± 0.0
0.792TrpAsp: 0.792 ± 0.0
0.264TrpGlu: 0.264 ± 0.0
0.792TrpPhe: 0.792 ± 0.0
0.264TrpGly: 0.264 ± 0.0
0.528TrpHis: 0.528 ± 0.0
0.264TrpIle: 0.264 ± 0.0
0.792TrpLys: 0.792 ± 0.0
1.321TrpLeu: 1.321 ± 0.0
0.0TrpMet: 0.0 ± 0.0
1.321TrpAsn: 1.321 ± 0.0
0.264TrpPro: 0.264 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.528TrpArg: 0.528 ± 0.0
0.528TrpSer: 0.528 ± 0.0
1.057TrpThr: 1.057 ± 0.0
1.585TrpVal: 1.585 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.264TrpTyr: 0.264 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.698TyrAla: 3.698 ± 0.0
0.792TyrCys: 0.792 ± 0.0
3.17TyrAsp: 3.17 ± 0.0
2.113TyrGlu: 2.113 ± 0.0
1.321TyrPhe: 1.321 ± 0.0
1.057TyrGly: 1.057 ± 0.0
0.528TyrHis: 0.528 ± 0.0
1.321TyrIle: 1.321 ± 0.0
5.018TyrLys: 5.018 ± 0.0
2.113TyrLeu: 2.113 ± 0.0
0.792TyrMet: 0.792 ± 0.0
3.434TyrAsn: 3.434 ± 0.0
1.321TyrPro: 1.321 ± 0.0
1.585TyrGln: 1.585 ± 0.0
1.849TyrArg: 1.849 ± 0.0
4.226TyrSer: 4.226 ± 0.0
2.905TyrThr: 2.905 ± 0.0
1.849TyrVal: 1.849 ± 0.0
0.264TyrTrp: 0.264 ± 0.0
0.792TyrTyr: 0.792 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (3787 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski