Capybara microvirus Cap1_SP_240

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V1FVR4|A0A4V1FVR4_9VIRU Major capsid protein OS=Capybara microvirus Cap1_SP_240 OX=2585417 PE=3 SV=1
MM1 pKa = 7.76IYY3 pKa = 10.19FVYY6 pKa = 10.44SIYY9 pKa = 11.07DD10 pKa = 3.77SVDD13 pKa = 2.7KK14 pKa = 11.02SYY16 pKa = 10.77TPPQLYY22 pKa = 9.86RR23 pKa = 11.84SEE25 pKa = 5.64DD26 pKa = 3.32SAQRR30 pKa = 11.84AFNHH34 pKa = 5.67FVEE37 pKa = 5.21CNFIGKK43 pKa = 8.83DD44 pKa = 3.53CKK46 pKa = 10.52LVCLGSWSDD55 pKa = 3.73TDD57 pKa = 5.4CKK59 pKa = 10.86FCLLDD64 pKa = 3.95PYY66 pKa = 10.46EE67 pKa = 4.63VYY69 pKa = 11.06VSGEE73 pKa = 4.19VKK75 pKa = 10.63SDD77 pKa = 3.32VV78 pKa = 3.38

Molecular weight: 9.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W4L3|A0A4P8W4L3_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_240 OX=2585417 PE=4 SV=1
MM1 pKa = 7.95CINPKK6 pKa = 9.54RR7 pKa = 11.84VKK9 pKa = 10.14IKK11 pKa = 10.69NPCHH15 pKa = 6.43FNGALNEE22 pKa = 4.04FFRR25 pKa = 11.84EE26 pKa = 4.0PFIIRR31 pKa = 11.84YY32 pKa = 7.49VPCKK36 pKa = 10.33RR37 pKa = 11.84CVEE40 pKa = 4.17CQINEE45 pKa = 4.25SKK47 pKa = 10.45EE48 pKa = 3.56WALRR52 pKa = 11.84MSLEE56 pKa = 3.75ADD58 pKa = 3.91KK59 pKa = 11.62YY60 pKa = 10.62QDD62 pKa = 3.63CCFLTLTYY70 pKa = 11.13DD71 pKa = 3.8DD72 pKa = 5.39DD73 pKa = 4.57NNPRR77 pKa = 11.84SLNKK81 pKa = 9.31TDD83 pKa = 3.36YY84 pKa = 11.09QKK86 pKa = 10.99FLKK89 pKa = 10.22RR90 pKa = 11.84LRR92 pKa = 11.84KK93 pKa = 9.68HH94 pKa = 6.41ISPTKK99 pKa = 9.71IKK101 pKa = 10.26YY102 pKa = 9.48FLSAEE107 pKa = 4.21YY108 pKa = 10.38GGKK111 pKa = 7.22TFRR114 pKa = 11.84PHH116 pKa = 4.25YY117 pKa = 10.0HH118 pKa = 6.99LIIFGWKK125 pKa = 9.81PEE127 pKa = 4.09DD128 pKa = 3.76AFPLKK133 pKa = 10.52VDD135 pKa = 3.41EE136 pKa = 5.59KK137 pKa = 11.29GNQLYY142 pKa = 10.39YY143 pKa = 10.86SPTVAKK149 pKa = 9.56LWLYY153 pKa = 9.86GFHH156 pKa = 7.03SVGEE160 pKa = 4.15PTQQSMLYY168 pKa = 8.53CAKK171 pKa = 10.25YY172 pKa = 9.48LQKK175 pKa = 10.62LQSVPDD181 pKa = 3.97GFVKK185 pKa = 10.54PFVAMSKK192 pKa = 9.47MDD194 pKa = 3.67GPLGYY199 pKa = 9.35PGQLSEE205 pKa = 4.51GQSTYY210 pKa = 11.44DD211 pKa = 3.17RR212 pKa = 11.84LSYY215 pKa = 10.31AGKK218 pKa = 9.84IEE220 pKa = 4.04YY221 pKa = 9.96VPQSFWRR228 pKa = 11.84RR229 pKa = 11.84AVKK232 pKa = 10.32DD233 pKa = 3.66DD234 pKa = 3.45EE235 pKa = 5.41LIRR238 pKa = 11.84LDD240 pKa = 3.16RR241 pKa = 11.84ALAVEE246 pKa = 3.95RR247 pKa = 11.84RR248 pKa = 11.84LRR250 pKa = 11.84SFKK253 pKa = 10.78IPDD256 pKa = 3.52LEE258 pKa = 4.24SVEE261 pKa = 4.1RR262 pKa = 11.84RR263 pKa = 11.84KK264 pKa = 10.21QRR266 pKa = 11.84ILEE269 pKa = 4.09NLHH272 pKa = 7.02LGLDD276 pKa = 3.5KK277 pKa = 11.07QKK279 pKa = 11.24NIDD282 pKa = 3.54YY283 pKa = 11.13NKK285 pKa = 9.96IEE287 pKa = 4.38VKK289 pKa = 9.64RR290 pKa = 11.84AHH292 pKa = 5.26VRR294 pKa = 11.84RR295 pKa = 11.84VNARR299 pKa = 11.84MRR301 pKa = 11.84VRR303 pKa = 11.84TRR305 pKa = 11.84KK306 pKa = 10.2AMIDD310 pKa = 3.5YY311 pKa = 8.74QLSMRR316 pKa = 11.84EE317 pKa = 3.86VYY319 pKa = 10.34DD320 pKa = 3.37YY321 pKa = 11.8DD322 pKa = 5.18KK323 pKa = 11.27IFF325 pKa = 3.77

Molecular weight: 38.6 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1360

78

552

226.7

25.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.618 ± 1.305

1.397 ± 0.632

5.882 ± 0.483

5.735 ± 0.806

4.779 ± 0.957

5.588 ± 0.928

1.691 ± 0.272

5.0 ± 0.565

6.397 ± 1.155

7.941 ± 0.549

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.985 ± 0.258

5.809 ± 0.657

4.706 ± 0.626

4.265 ± 0.564

5.368 ± 0.849

7.426 ± 0.682

5.662 ± 0.882

6.912 ± 0.53

1.25 ± 0.26

5.588 ± 0.933
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski