Staphylococcus virus 96

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Azeredovirinae; Phietavirus

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 79 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q4ZBT9|Q4ZBT9_9CAUD ORF060 OS=Staphylococcus virus 96 OX=320842 PE=4 SV=1
MM1 pKa = 7.45ATQKK5 pKa = 10.54QVDD8 pKa = 4.13YY9 pKa = 11.64VMSLQEE15 pKa = 3.89QLGLEE20 pKa = 4.28DD21 pKa = 3.85CEE23 pKa = 5.23KK24 pKa = 10.6YY25 pKa = 9.42TDD27 pKa = 3.83EE28 pKa = 4.01QVKK31 pKa = 10.4AMSHH35 pKa = 6.03KK36 pKa = 10.06EE37 pKa = 3.72VSNVIEE43 pKa = 4.26NYY45 pKa = 7.91KK46 pKa = 9.56TSIWDD51 pKa = 3.31EE52 pKa = 3.94EE53 pKa = 4.79LYY55 pKa = 10.65NEE57 pKa = 4.54CMSFGLPNCC66 pKa = 4.51

Molecular weight: 7.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q4ZBS7|Q4ZBS7_9CAUD ORF024 OS=Staphylococcus virus 96 OX=320842 PE=4 SV=1
MM1 pKa = 7.63NILLLLEE8 pKa = 4.68IIRR11 pKa = 11.84RR12 pKa = 11.84LQLLRR17 pKa = 11.84RR18 pKa = 11.84RR19 pKa = 11.84VKK21 pKa = 10.55KK22 pKa = 9.47EE23 pKa = 3.69RR24 pKa = 11.84KK25 pKa = 8.83RR26 pKa = 11.84STRR29 pKa = 11.84NKK31 pKa = 10.21LRR33 pKa = 3.66

Molecular weight: 4.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

79

0

79

14130

33

1047

178.9

20.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.633 ± 0.341

0.538 ± 0.091

6.277 ± 0.316

7.403 ± 0.443

4.381 ± 0.255

5.598 ± 0.334

1.72 ± 0.165

7.488 ± 0.239

9.179 ± 0.337

7.615 ± 0.28

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.682 ± 0.21

6.525 ± 0.292

2.923 ± 0.224

4.14 ± 0.199

4.055 ± 0.224

6.03 ± 0.275

6.065 ± 0.266

6.249 ± 0.308

1.139 ± 0.152

4.36 ± 0.355
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski