Terrilactibacillus tamarindi

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Terrilactibacillus

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2956 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6N8CQ77|A0A6N8CQ77_9BACI PDZ domain-containing protein OS=Terrilactibacillus tamarindi OX=2599694 GN=GMB86_03540 PE=3 SV=1
MM1 pKa = 7.81PKK3 pKa = 9.43FTIIDD8 pKa = 3.67KK9 pKa = 8.11DD10 pKa = 3.61TCIACGACGAAAPDD24 pKa = 3.53IYY26 pKa = 10.99DD27 pKa = 3.8YY28 pKa = 11.65DD29 pKa = 4.89DD30 pKa = 5.1DD31 pKa = 6.44GIAFVLLDD39 pKa = 4.24KK40 pKa = 10.6NTGEE44 pKa = 3.81IGIPEE49 pKa = 4.34EE50 pKa = 5.39LIDD53 pKa = 5.61DD54 pKa = 4.74MIDD57 pKa = 3.35AYY59 pKa = 10.1EE60 pKa = 4.43GCPTDD65 pKa = 4.01SVRR68 pKa = 11.84VSNKK72 pKa = 9.18PFHH75 pKa = 6.73GNPDD79 pKa = 3.21RR80 pKa = 11.84DD81 pKa = 3.61EE82 pKa = 4.11

Molecular weight: 8.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6N8CPN8|A0A6N8CPN8_9BACI Uncharacterized protein OS=Terrilactibacillus tamarindi OX=2599694 GN=GMB86_08975 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 9.6RR3 pKa = 11.84TFQPNNRR10 pKa = 11.84KK11 pKa = 9.23RR12 pKa = 11.84KK13 pKa = 8.02KK14 pKa = 8.47VHH16 pKa = 5.56GFRR19 pKa = 11.84SRR21 pKa = 11.84MQTKK25 pKa = 9.96NGRR28 pKa = 11.84KK29 pKa = 8.74ILANRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.72GRR39 pKa = 11.84KK40 pKa = 8.69VLSAA44 pKa = 4.05

Molecular weight: 5.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2956

0

2956

876471

26

1584

296.5

33.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.423 ± 0.041

0.844 ± 0.016

5.309 ± 0.037

6.597 ± 0.05

4.447 ± 0.033

6.722 ± 0.041

2.399 ± 0.022

8.253 ± 0.047

7.371 ± 0.044

9.828 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.707 ± 0.025

4.515 ± 0.035

3.656 ± 0.03

3.873 ± 0.032

4.06 ± 0.033

6.239 ± 0.031

5.487 ± 0.027

6.781 ± 0.036

0.956 ± 0.016

3.533 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski