Malaciobacter mytili LMG 24559

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Arcobacter group; Malaciobacter; Malaciobacter mytili

Average proteome isoelectric point is 6.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2879 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A345J5I4|A0A345J5I4_9PROT Phosphoribosylamine--glycine ligase OS=Malaciobacter mytili LMG 24559 OX=1032238 GN=purD PE=3 SV=1
MM1 pKa = 7.48TKK3 pKa = 10.21QISKK7 pKa = 10.74NILFNTFKK15 pKa = 11.29VEE17 pKa = 4.32DD18 pKa = 3.93FTSLEE23 pKa = 3.95EE24 pKa = 4.61VINNMPPSVVEE35 pKa = 4.02YY36 pKa = 11.07YY37 pKa = 10.96LDD39 pKa = 3.84NLDD42 pKa = 4.08QIEE45 pKa = 4.45DD46 pKa = 3.28NSYY49 pKa = 10.91LNKK52 pKa = 9.94RR53 pKa = 11.84DD54 pKa = 3.91IEE56 pKa = 4.19HH57 pKa = 6.57SLYY60 pKa = 10.43FGNYY64 pKa = 8.75SLYY67 pKa = 10.86LDD69 pKa = 4.09YY70 pKa = 11.37SDD72 pKa = 5.93NIYY75 pKa = 11.11LEE77 pKa = 4.34IDD79 pKa = 3.31IKK81 pKa = 11.34DD82 pKa = 3.78EE83 pKa = 4.1EE84 pKa = 4.64TDD86 pKa = 3.86SFWW89 pKa = 5.47

Molecular weight: 10.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A345J753|A0A345J753_9PROT Ribonuclease HII OS=Malaciobacter mytili LMG 24559 OX=1032238 GN=rnhB PE=3 SV=1
MM1 pKa = 7.28KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.04QPHH8 pKa = 4.86NTPRR12 pKa = 11.84KK13 pKa = 7.31RR14 pKa = 11.84THH16 pKa = 5.83GFRR19 pKa = 11.84VRR21 pKa = 11.84MATKK25 pKa = 10.25NGRR28 pKa = 11.84KK29 pKa = 9.01IIKK32 pKa = 9.57ARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.81GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2879

0

2879

928648

37

10784

322.6

36.72

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.708 ± 0.052

0.908 ± 0.021

5.391 ± 0.096

7.375 ± 0.065

5.343 ± 0.056

5.197 ± 0.112

1.458 ± 0.021

9.873 ± 0.049

9.867 ± 0.104

9.847 ± 0.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.116 ± 0.025

6.724 ± 0.063

2.536 ± 0.034

2.864 ± 0.029

2.692 ± 0.035

6.49 ± 0.054

5.137 ± 0.069

5.604 ± 0.045

0.675 ± 0.013

4.195 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski