Tolypothrix campylonemoides VB511288

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Cyanobacteria/Melainabacteria group; Cyanobacteria; Nostocales; Tolypothrichaceae; Tolypothrix; Tolypothrix campylonemoides

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6864 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0C2PPN7|A0A0C2PPN7_9CYAN Short-chain dehydrogenase OS=Tolypothrix campylonemoides VB511288 OX=1245935 GN=SD81_28825 PE=3 SV=1
MM1 pKa = 7.39QIQFRR6 pKa = 11.84EE7 pKa = 4.21INPFDD12 pKa = 3.26LWIWLEE18 pKa = 3.86FSTIPSEE25 pKa = 4.14QEE27 pKa = 3.28KK28 pKa = 10.76KK29 pKa = 10.33YY30 pKa = 10.85VEE32 pKa = 4.18EE33 pKa = 4.59VFNSWFYY40 pKa = 11.05LGKK43 pKa = 10.59LGAFNAEE50 pKa = 3.81NLQVQEE56 pKa = 4.22TGLDD60 pKa = 3.91LSYY63 pKa = 10.52MDD65 pKa = 5.37YY66 pKa = 11.24DD67 pKa = 3.56PEE69 pKa = 6.75GYY71 pKa = 10.18DD72 pKa = 3.44KK73 pKa = 11.36SLLALMHH80 pKa = 6.49NMGQFEE86 pKa = 4.9YY87 pKa = 9.84EE88 pKa = 4.39GTWARR93 pKa = 11.84CWFDD97 pKa = 4.77LGTSDD102 pKa = 6.2AIALDD107 pKa = 3.43ILINALKK114 pKa = 10.18QLNQEE119 pKa = 4.25YY120 pKa = 8.11VTIEE124 pKa = 3.51QLYY127 pKa = 10.33IGGEE131 pKa = 3.99NEE133 pKa = 3.95DD134 pKa = 3.51WSVEE138 pKa = 3.82DD139 pKa = 4.09SEE141 pKa = 4.69NGRR144 pKa = 11.84SSFIYY149 pKa = 10.68DD150 pKa = 3.23NN151 pKa = 3.84

Molecular weight: 17.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0C2L8C7|A0A0C2L8C7_9CYAN Enoyl-CoA hydratase OS=Tolypothrix campylonemoides VB511288 OX=1245935 GN=SD81_43775 PE=4 SV=1
MM1 pKa = 7.0ATTWQMHH8 pKa = 5.66RR9 pKa = 11.84ARR11 pKa = 11.84PVKK14 pKa = 10.16VHH16 pKa = 6.56GGAASPAARR25 pKa = 11.84EE26 pKa = 3.81GHH28 pKa = 5.15RR29 pKa = 11.84RR30 pKa = 11.84GRR32 pKa = 11.84GIHH35 pKa = 6.41AFAGMTAGTRR45 pKa = 11.84QRR47 pKa = 11.84GRR49 pKa = 11.84ARR51 pKa = 11.84SRR53 pKa = 11.84PRR55 pKa = 11.84RR56 pKa = 11.84TGAAAARR63 pKa = 11.84SRR65 pKa = 11.84RR66 pKa = 11.84IGRR69 pKa = 11.84KK70 pKa = 8.1RR71 pKa = 11.84LAWLRR76 pKa = 11.84IPHH79 pKa = 6.44HH80 pKa = 6.71LGPP83 pKa = 4.72

Molecular weight: 9.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6863

1

6864

2116098

30

3801

308.3

34.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.782 ± 0.049

0.981 ± 0.01

4.876 ± 0.023

6.348 ± 0.031

3.796 ± 0.021

6.892 ± 0.035

2.078 ± 0.021

6.071 ± 0.031

4.657 ± 0.03

10.753 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.784 ± 0.014

3.94 ± 0.026

4.757 ± 0.023

5.367 ± 0.03

6.03 ± 0.054

6.09 ± 0.03

5.396 ± 0.028

7.154 ± 0.025

1.37 ± 0.013

2.876 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski