Algibacter alginicilyticus

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Algibacter

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3236 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0P0DD31|A0A0P0DD31_9FLAO Altronate hydrolase OS=Algibacter alginicilyticus OX=1736674 GN=APS56_12635 PE=3 SV=1
MM1 pKa = 7.18ITKK4 pKa = 10.01QSLRR8 pKa = 11.84IFLSTVFFSFFIFLSCDD25 pKa = 3.39DD26 pKa = 4.72DD27 pKa = 5.85NEE29 pKa = 4.77INDD32 pKa = 3.63ATNPNFSNLITSISSAPGLEE52 pKa = 4.73FIFEE56 pKa = 4.29GTISDD61 pKa = 4.15DD62 pKa = 4.12NGIEE66 pKa = 4.23NININYY72 pKa = 9.23DD73 pKa = 2.64NWYY76 pKa = 8.56VDD78 pKa = 3.4KK79 pKa = 11.17NITFDD84 pKa = 4.03EE85 pKa = 4.31PLKK88 pKa = 10.65EE89 pKa = 3.91YY90 pKa = 10.72NLNYY94 pKa = 10.04KK95 pKa = 10.18FLVPEE100 pKa = 4.13EE101 pKa = 4.44EE102 pKa = 4.74EE103 pKa = 4.49PNSSHH108 pKa = 6.47TIKK111 pKa = 10.62ISATDD116 pKa = 3.17IAGNITTYY124 pKa = 11.21DD125 pKa = 3.63VIVSLDD131 pKa = 3.61YY132 pKa = 10.04DD133 pKa = 3.75TTLPQVAFISPISGSSNTVGDD154 pKa = 4.04LVEE157 pKa = 4.56LNIAFSDD164 pKa = 3.75NKK166 pKa = 10.19VLDD169 pKa = 4.14SIIVKK174 pKa = 9.14TEE176 pKa = 3.7SLDD179 pKa = 3.81YY180 pKa = 10.39EE181 pKa = 5.03VKK183 pKa = 10.85LKK185 pKa = 10.69MPDD188 pKa = 2.81NTLNYY193 pKa = 10.18NFTDD197 pKa = 3.46SVEE200 pKa = 4.1IPLTGISGAIEE211 pKa = 3.96FTATGIDD218 pKa = 3.33KK219 pKa = 10.14TGNTTTVYY227 pKa = 9.54STILVGEE234 pKa = 4.09KK235 pKa = 10.75DD236 pKa = 4.1EE237 pKa = 4.43IFNMYY242 pKa = 10.62AVGTSTWYY250 pKa = 10.07EE251 pKa = 3.82WDD253 pKa = 3.52PSKK256 pKa = 10.75ATEE259 pKa = 3.77MWKK262 pKa = 10.49NPDD265 pKa = 3.37NNDD268 pKa = 2.78WFVLEE273 pKa = 5.26FYY275 pKa = 10.08YY276 pKa = 11.09TMGNGVKK283 pKa = 10.49FIGQLDD289 pKa = 3.85WEE291 pKa = 4.63PNNWGTDD298 pKa = 3.59PNDD301 pKa = 3.06SSKK304 pKa = 10.7IINSQDD310 pKa = 2.79SGTIEE315 pKa = 4.19FPEE318 pKa = 3.95EE319 pKa = 4.1GYY321 pKa = 10.8YY322 pKa = 10.3HH323 pKa = 7.47VEE325 pKa = 3.93FNPYY329 pKa = 7.75TLEE332 pKa = 3.81YY333 pKa = 8.93TYY335 pKa = 11.31EE336 pKa = 4.15KK337 pKa = 10.43MEE339 pKa = 3.83VDD341 pKa = 3.32VDD343 pKa = 4.07VKK345 pKa = 11.35EE346 pKa = 4.14NMYY349 pKa = 11.46LMGNGFAGYY358 pKa = 10.53DD359 pKa = 4.0LDD361 pKa = 4.49WNPADD366 pKa = 5.25AIPMEE371 pKa = 5.0KK372 pKa = 10.26DD373 pKa = 3.41SNGNPYY379 pKa = 10.29VFTINVEE386 pKa = 3.96ITEE389 pKa = 4.14DD390 pKa = 3.36TSLKK394 pKa = 10.79FIGQTDD400 pKa = 3.21GWSPFDD406 pKa = 4.04CGFEE410 pKa = 4.26VGGEE414 pKa = 4.16TILPVNYY421 pKa = 9.45IKK423 pKa = 10.94CKK425 pKa = 10.18TGDD428 pKa = 3.26GSQDD432 pKa = 3.25LKK434 pKa = 11.21FKK436 pKa = 10.48NQAGTYY442 pKa = 8.5TITFDD447 pKa = 3.76YY448 pKa = 10.62FLLRR452 pKa = 11.84ATIHH456 pKa = 5.91QYY458 pKa = 10.0NN459 pKa = 3.49

Molecular weight: 51.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0P0CQ50|A0A0P0CQ50_9FLAO Uncharacterized protein OS=Algibacter alginicilyticus OX=1736674 GN=APS56_07705 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSKK10 pKa = 9.13RR11 pKa = 11.84KK12 pKa = 9.48RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 9.49HH17 pKa = 3.94GFRR20 pKa = 11.84EE21 pKa = 4.27RR22 pKa = 11.84MASANGRR29 pKa = 11.84KK30 pKa = 9.04VLARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.09GRR40 pKa = 11.84KK41 pKa = 7.97KK42 pKa = 10.62LSVSSEE48 pKa = 4.03TRR50 pKa = 11.84HH51 pKa = 5.96KK52 pKa = 10.68KK53 pKa = 9.8

Molecular weight: 6.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3236

0

3236

1177855

50

3879

364.0

41.13

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.972 ± 0.04

0.735 ± 0.014

5.593 ± 0.03

6.346 ± 0.035

5.223 ± 0.033

6.243 ± 0.045

1.81 ± 0.021

8.363 ± 0.045

7.953 ± 0.055

9.152 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.065 ± 0.022

6.886 ± 0.043

3.328 ± 0.022

3.243 ± 0.024

3.137 ± 0.025

6.641 ± 0.035

5.955 ± 0.043

6.025 ± 0.032

1.08 ± 0.016

4.249 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski