Thiohalocapsa marina

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3686 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5M8FKG4|A0A5M8FKG4_9GAMM Ribosomal RNA small subunit methyltransferase E OS=Thiohalocapsa marina OX=424902 GN=F2Q65_08725 PE=3 SV=1
MM1 pKa = 7.37NKK3 pKa = 9.96PYY5 pKa = 9.52RR6 pKa = 11.84TQPNSNRR13 pKa = 11.84SSKK16 pKa = 10.05PSAWMSLALGLSISLMSSASFAAPFGYY43 pKa = 10.62AIDD46 pKa = 4.71GDD48 pKa = 4.28SLAPSVYY55 pKa = 10.52EE56 pKa = 5.16IDD58 pKa = 3.97FADD61 pKa = 3.65NSISEE66 pKa = 4.36IGTAVTTDD74 pKa = 3.83LPHH77 pKa = 6.9QVDD80 pKa = 3.87EE81 pKa = 4.81VEE83 pKa = 4.58ASSFGPGGVTLFAVTDD99 pKa = 4.13DD100 pKa = 3.85NSYY103 pKa = 11.36KK104 pKa = 10.12PGHH107 pKa = 7.12DD108 pKa = 3.46IDD110 pKa = 6.51DD111 pKa = 4.72DD112 pKa = 4.46VDD114 pKa = 3.82GTILTDD120 pKa = 3.82ALYY123 pKa = 9.72TINTTTGAATWIADD137 pKa = 3.99LSRR140 pKa = 11.84AIDD143 pKa = 3.87DD144 pKa = 4.74PGLAFCSSDD153 pKa = 2.9QTMYY157 pKa = 11.12LSSTVTGGGGALCARR172 pKa = 11.84PEE174 pKa = 4.03YY175 pKa = 10.97GRR177 pKa = 11.84TEE179 pKa = 3.73

Molecular weight: 18.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5M8FU65|A0A5M8FU65_9GAMM 50S ribosomal protein L13 OS=Thiohalocapsa marina OX=424902 GN=rplM PE=3 SV=1
MM1 pKa = 7.31KK2 pKa = 9.5QTFKK6 pKa = 10.9PSRR9 pKa = 11.84LKK11 pKa = 10.5RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 6.41GFRR19 pKa = 11.84ARR21 pKa = 11.84CATRR25 pKa = 11.84NGRR28 pKa = 11.84KK29 pKa = 9.36VIQARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.12GRR39 pKa = 11.84ARR41 pKa = 11.84LTPP44 pKa = 3.93

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3686

0

3686

1237040

31

5300

335.6

36.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.146 ± 0.056

1.001 ± 0.014

6.034 ± 0.027

5.718 ± 0.031

3.342 ± 0.024

8.291 ± 0.057

2.273 ± 0.019

4.539 ± 0.027

2.353 ± 0.03

11.618 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.173 ± 0.021

2.268 ± 0.021

5.507 ± 0.031

4.039 ± 0.029

8.047 ± 0.045

5.028 ± 0.028

4.846 ± 0.037

7.036 ± 0.039

1.418 ± 0.018

2.324 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski