Fimbriimonas ginsengisoli Gsoil 348

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas; Fimbriimonas ginsengisoli

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4817 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A068NQ48|A0A068NQ48_9BACT Uncharacterized protein OS=Fimbriimonas ginsengisoli Gsoil 348 OX=661478 GN=OP10G_2310 PE=4 SV=1
MM1 pKa = 7.64FSTLIDD7 pKa = 3.78GAEE10 pKa = 4.24FACGLQLQTGLDD22 pKa = 3.79EE23 pKa = 5.3PDD25 pKa = 4.25DD26 pKa = 5.2GIVCAEE32 pKa = 4.08VVSACEE38 pKa = 4.16SMDD41 pKa = 3.84FRR43 pKa = 11.84LDD45 pKa = 3.39VQGDD49 pKa = 3.86IEE51 pKa = 4.67SHH53 pKa = 6.4CNRR56 pKa = 11.84SPQPFF61 pKa = 3.33

Molecular weight: 6.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A068NP97|A0A068NP97_9BACT Alpha/beta fold superfamily hydrolase OS=Fimbriimonas ginsengisoli Gsoil 348 OX=661478 GN=OP10G_1903 PE=4 SV=1
MM1 pKa = 7.57GSKK4 pKa = 10.21KK5 pKa = 10.32LPRR8 pKa = 11.84INHH11 pKa = 5.35GMRR14 pKa = 11.84AGLVALLIALPLLALGASMASHH36 pKa = 7.64PASGHH41 pKa = 4.37GTAPGALAAMAFGAVSMFGRR61 pKa = 11.84RR62 pKa = 11.84RR63 pKa = 11.84TT64 pKa = 3.53

Molecular weight: 6.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4817

0

4817

1529550

37

2429

317.5

34.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.357 ± 0.043

0.863 ± 0.01

5.592 ± 0.025

5.947 ± 0.04

3.83 ± 0.022

8.585 ± 0.031

2.062 ± 0.016

4.821 ± 0.022

3.9 ± 0.029

9.619 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.339 ± 0.018

3.044 ± 0.023

5.522 ± 0.026

3.241 ± 0.019

6.817 ± 0.039

6.013 ± 0.033

5.65 ± 0.042

7.514 ± 0.033

1.566 ± 0.018

2.717 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski