Paguma larvata circovirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; Civet circovirus

Average proteome isoelectric point is 8.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3B8GVJ6|A0A3B8GVJ6_9CIRC ATP-dependent helicase Rep OS=Paguma larvata circovirus OX=2294094 PE=3 SV=1
MM1 pKa = 7.82AEE3 pKa = 4.0RR4 pKa = 11.84VPPVRR9 pKa = 11.84WCFTLNNWTQEE20 pKa = 3.91EE21 pKa = 4.67WDD23 pKa = 4.69SITQVLGPTVKK34 pKa = 10.14YY35 pKa = 10.17LCVGKK40 pKa = 10.3EE41 pKa = 3.77VGKK44 pKa = 10.79EE45 pKa = 4.14GTQHH49 pKa = 5.54LQGYY53 pKa = 8.04MEE55 pKa = 4.45LKK57 pKa = 9.53KK58 pKa = 10.43RR59 pKa = 11.84KK60 pKa = 9.08RR61 pKa = 11.84LKK63 pKa = 9.77QVKK66 pKa = 9.42DD67 pKa = 3.41LPGLQRR73 pKa = 11.84AHH75 pKa = 6.95LEE77 pKa = 3.9AARR80 pKa = 11.84GNSSQAAEE88 pKa = 4.17YY89 pKa = 9.98CKK91 pKa = 10.74KK92 pKa = 10.63EE93 pKa = 3.54GDD95 pKa = 3.77YY96 pKa = 11.6LEE98 pKa = 5.47FGTPGNEE105 pKa = 3.62QGKK108 pKa = 8.03RR109 pKa = 11.84TDD111 pKa = 3.53LNEE114 pKa = 3.64ACRR117 pKa = 11.84ILRR120 pKa = 11.84EE121 pKa = 4.36SNGNLRR127 pKa = 11.84AVAEE131 pKa = 4.11KK132 pKa = 10.77QEE134 pKa = 4.14AVFVKK139 pKa = 10.36YY140 pKa = 10.24FGGLQRR146 pKa = 11.84YY147 pKa = 8.51CYY149 pKa = 9.89TMNLGGRR156 pKa = 11.84RR157 pKa = 11.84DD158 pKa = 3.85FKK160 pKa = 10.95TITTVICGPPGCGKK174 pKa = 8.21TRR176 pKa = 11.84YY177 pKa = 9.58VFEE180 pKa = 4.57KK181 pKa = 10.82VGGDD185 pKa = 3.5LGRR188 pKa = 11.84VYY190 pKa = 10.08MKK192 pKa = 10.55PRR194 pKa = 11.84GLWWDD199 pKa = 4.84GYY201 pKa = 10.42CGQEE205 pKa = 4.64VVCLDD210 pKa = 4.44DD211 pKa = 3.98FYY213 pKa = 11.88GWVTFDD219 pKa = 3.11EE220 pKa = 4.66LLRR223 pKa = 11.84VLDD226 pKa = 4.89RR227 pKa = 11.84YY228 pKa = 9.48PLRR231 pKa = 11.84VPVKK235 pKa = 8.69GAYY238 pKa = 9.4VDD240 pKa = 4.35FVSRR244 pKa = 11.84EE245 pKa = 3.86VYY247 pKa = 8.66ITSNSTPDD255 pKa = 2.9QWYY258 pKa = 7.94TSEE261 pKa = 4.59NIHH264 pKa = 6.32GRR266 pKa = 11.84LEE268 pKa = 3.82ALYY271 pKa = 10.52RR272 pKa = 11.84RR273 pKa = 11.84IDD275 pKa = 4.26HH276 pKa = 6.29YY277 pKa = 10.33LTWDD281 pKa = 3.66DD282 pKa = 4.25RR283 pKa = 11.84SKK285 pKa = 10.97QLSPGNPMFPIAYY298 pKa = 9.59

Molecular weight: 34.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3B8GVJ6|A0A3B8GVJ6_9CIRC ATP-dependent helicase Rep OS=Paguma larvata circovirus OX=2294094 PE=3 SV=1
MM1 pKa = 6.61YY2 pKa = 9.93RR3 pKa = 11.84RR4 pKa = 11.84RR5 pKa = 11.84RR6 pKa = 11.84FRR8 pKa = 11.84RR9 pKa = 11.84RR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84HH13 pKa = 5.17HH14 pKa = 6.67HH15 pKa = 5.24PHH17 pKa = 5.01HH18 pKa = 6.39HH19 pKa = 5.98RR20 pKa = 11.84RR21 pKa = 11.84YY22 pKa = 8.92HH23 pKa = 6.69IMRR26 pKa = 11.84HH27 pKa = 4.45HH28 pKa = 6.07HH29 pKa = 6.5FKK31 pKa = 10.76RR32 pKa = 11.84QFFHH36 pKa = 7.24FLFRR40 pKa = 11.84KK41 pKa = 6.55QTSFFIQQVPAGYY54 pKa = 9.93SKK56 pKa = 11.13EE57 pKa = 4.12GVKK60 pKa = 10.08QGQFKK65 pKa = 9.61PQYY68 pKa = 8.07SWVRR72 pKa = 11.84KK73 pKa = 9.56HH74 pKa = 6.81FFWTLNEE81 pKa = 4.05FLRR84 pKa = 11.84DD85 pKa = 3.85SQSLGLFQYY94 pKa = 10.78YY95 pKa = 10.3RR96 pKa = 11.84ILKK99 pKa = 10.32AGITFKK105 pKa = 10.73PQDD108 pKa = 4.72PITDD112 pKa = 3.14RR113 pKa = 11.84RR114 pKa = 11.84GYY116 pKa = 10.83GFTAIDD122 pKa = 3.73FTSKK126 pKa = 10.61PEE128 pKa = 4.17SGSFDD133 pKa = 4.26PFWFWQTQNDD143 pKa = 5.1PIPININSKK152 pKa = 4.36TTKK155 pKa = 10.25FFTTTKK161 pKa = 8.25RR162 pKa = 11.84HH163 pKa = 5.26HH164 pKa = 6.96RR165 pKa = 11.84NVIPKK170 pKa = 10.02PMLTDD175 pKa = 3.56EE176 pKa = 4.65PHH178 pKa = 7.07PDD180 pKa = 3.12LHH182 pKa = 7.34FKK184 pKa = 9.48EE185 pKa = 4.54NWWFLNQKK193 pKa = 9.69AGPWLTTADD202 pKa = 3.37WLVPYY207 pKa = 10.68LGLWWFLDD215 pKa = 3.81LNFMNIVNPPTEE227 pKa = 4.33DD228 pKa = 3.68AGDD231 pKa = 3.34KK232 pKa = 9.76TLYY235 pKa = 10.25IKK237 pKa = 10.01TPMGLNFNFTKK248 pKa = 10.6FIHH251 pKa = 5.72VVFRR255 pKa = 11.84DD256 pKa = 3.52EE257 pKa = 4.16CC258 pKa = 5.64

Molecular weight: 31.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

556

258

298

278.0

33.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.417 ± 0.736

1.799 ± 0.951

5.216 ± 0.119

5.036 ± 1.566

7.014 ± 2.849

7.374 ± 1.836

3.777 ± 1.896

3.777 ± 0.851

6.655 ± 0.217

7.734 ± 0.772

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.799 ± 0.094

4.137 ± 0.347

5.755 ± 0.823

4.676 ± 0.244

8.273 ± 0.171

3.417 ± 0.048

6.475 ± 0.6

5.576 ± 1.668

3.237 ± 0.431

4.856 ± 0.922
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski