Scleroderma citrinum Foug A

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Boletales; Sclerodermatineae; Sclerodermataceae; Scleroderma; Scleroderma citrinum

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 20903 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0C3CS27|A0A0C3CS27_9AGAM Uncharacterized protein (Fragment) OS=Scleroderma citrinum Foug A OX=1036808 GN=SCLCIDRAFT_88157 PE=4 SV=1
MM1 pKa = 7.88GIGNPRR7 pKa = 11.84DD8 pKa = 3.42EE9 pKa = 4.68YY10 pKa = 10.69YY11 pKa = 11.38SNGEE15 pKa = 3.91GLLPPEE21 pKa = 4.63PVSPQTPPLYY31 pKa = 10.38NSPCIQDD38 pKa = 3.23EE39 pKa = 4.54DD40 pKa = 3.98GDD42 pKa = 4.22ARR44 pKa = 11.84STPADD49 pKa = 3.56YY50 pKa = 10.89QEE52 pKa = 4.05EE53 pKa = 4.24HH54 pKa = 6.51SAEE57 pKa = 4.08SSTNFNKK64 pKa = 10.14IYY66 pKa = 10.46RR67 pKa = 11.84LYY69 pKa = 10.6INDD72 pKa = 4.89LGDD75 pKa = 4.79HH76 pKa = 7.16DD77 pKa = 6.13LLDD80 pKa = 4.8DD81 pKa = 5.44DD82 pKa = 5.34EE83 pKa = 5.98DD84 pKa = 4.13AAEE87 pKa = 4.47LKK89 pKa = 11.13SMADD93 pKa = 3.63LLHH96 pKa = 7.34DD97 pKa = 3.85IVV99 pKa = 4.39

Molecular weight: 11.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0C2ZX09|A0A0C2ZX09_9AGAM Uncharacterized protein OS=Scleroderma citrinum Foug A OX=1036808 GN=SCLCIDRAFT_193335 PE=4 SV=1
WW1 pKa = 7.59RR2 pKa = 11.84ISKK5 pKa = 10.4GGWRR9 pKa = 11.84ISKK12 pKa = 8.82VVQRR16 pKa = 11.84ISMVVWRR23 pKa = 11.84ISMVRR28 pKa = 11.84WRR30 pKa = 11.84ISKK33 pKa = 9.18GVWRR37 pKa = 11.84IFKK40 pKa = 9.81GVWRR44 pKa = 11.84IFKK47 pKa = 9.83GVWRR51 pKa = 11.84ISKK54 pKa = 7.73MVWRR58 pKa = 11.84ISKK61 pKa = 10.26RR62 pKa = 3.34

Molecular weight: 7.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

20898

5

20903

6241616

49

5050

298.6

33.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.829 ± 0.016

1.768 ± 0.009

5.549 ± 0.013

5.69 ± 0.016

3.72 ± 0.014

6.168 ± 0.018

3.04 ± 0.011

5.007 ± 0.015

4.477 ± 0.017

9.395 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.29 ± 0.008

3.487 ± 0.011

6.277 ± 0.024

3.919 ± 0.013

6.122 ± 0.016

8.594 ± 0.024

6.036 ± 0.013

6.395 ± 0.013

1.571 ± 0.008

2.667 ± 0.01
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski