Schaalia turicensis ACS-279-V-Col4

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Actinomycetales; Actinomycetaceae; Schaalia; Schaalia turicensis

Average proteome isoelectric point is 5.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1709 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K0YXG0|K0YXG0_9ACTO Thioredoxin OS=Schaalia turicensis ACS-279-V-Col4 OX=883077 GN=HMPREF9241_00179 PE=3 SV=1
MM1 pKa = 7.77EE2 pKa = 6.23DD3 pKa = 3.11GHH5 pKa = 7.46EE6 pKa = 4.55GEE8 pKa = 5.07LSGEE12 pKa = 3.81AAEE15 pKa = 5.31AYY17 pKa = 9.55DD18 pKa = 3.87VLYY21 pKa = 10.89DD22 pKa = 6.13AITKK26 pKa = 10.26DD27 pKa = 3.54NQQ29 pKa = 3.12

Molecular weight: 3.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K0Z7Q2|K0Z7Q2_9ACTO Phosphoenolpyruvate carboxykinase [GTP] OS=Schaalia turicensis ACS-279-V-Col4 OX=883077 GN=pckG PE=3 SV=1
MM1 pKa = 5.72TTKK4 pKa = 9.84RR5 pKa = 11.84TFQPNNRR12 pKa = 11.84RR13 pKa = 11.84RR14 pKa = 11.84AKK16 pKa = 8.7THH18 pKa = 5.16GFRR21 pKa = 11.84LRR23 pKa = 11.84MSTRR27 pKa = 11.84AGRR30 pKa = 11.84AILSSRR36 pKa = 11.84RR37 pKa = 11.84RR38 pKa = 11.84KK39 pKa = 9.86GRR41 pKa = 11.84AKK43 pKa = 10.68LSAA46 pKa = 3.92

Molecular weight: 5.39 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1709

0

1709

574013

29

1930

335.9

36.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.237 ± 0.068

0.773 ± 0.017

6.217 ± 0.041

6.16 ± 0.059

3.138 ± 0.038

8.214 ± 0.056

2.138 ± 0.026

5.412 ± 0.039

3.377 ± 0.058

9.414 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.331 ± 0.026

2.793 ± 0.038

4.797 ± 0.04

3.288 ± 0.038

6.132 ± 0.058

6.452 ± 0.061

6.256 ± 0.045

8.244 ± 0.052

1.439 ± 0.026

2.187 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski