Persicimonas caeni

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Bradymonadales; Bradymonadaceae; Persicimonas

Average proteome isoelectric point is 5.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5752 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Y6Q1Y0|A0A4Y6Q1Y0_9DELT FHA domain-containing protein OS=Persicimonas caeni OX=2292766 GN=FIV42_27950 PE=3 SV=1
MM1 pKa = 8.04DD2 pKa = 4.09VMEE5 pKa = 4.77KK6 pKa = 10.23CAAVRR11 pKa = 11.84PSASGLVRR19 pKa = 11.84RR20 pKa = 11.84FRR22 pKa = 11.84SLVALSAFVAAASWTVDD39 pKa = 2.91ASASCTTIEE48 pKa = 4.61DD49 pKa = 4.74FEE51 pKa = 5.27SGWPNSPWTVYY62 pKa = 10.57DD63 pKa = 3.7LPGTRR68 pKa = 11.84TTTYY72 pKa = 10.43SRR74 pKa = 11.84SGSYY78 pKa = 10.28GVQNPDD84 pKa = 2.05WVYY87 pKa = 9.77RR88 pKa = 11.84TDD90 pKa = 3.35VTIGQQAGEE99 pKa = 4.1RR100 pKa = 11.84LGLWFHH106 pKa = 6.89GSTASSGRR114 pKa = 11.84VYY116 pKa = 10.84LGFDD120 pKa = 3.69ADD122 pKa = 3.69GSGAKK127 pKa = 9.26TFIASLNTTDD137 pKa = 5.97IRR139 pKa = 11.84FQDD142 pKa = 3.4NAGYY146 pKa = 10.18NHH148 pKa = 6.43TQLNQTSQTFNSQWYY163 pKa = 7.77YY164 pKa = 11.56LEE166 pKa = 4.79VEE168 pKa = 4.49FNGGGSVTGRR178 pKa = 11.84LYY180 pKa = 11.07DD181 pKa = 3.5SDD183 pKa = 3.82GTTLINSLTQSFSGSVVGGVVLRR206 pKa = 11.84AFDD209 pKa = 4.78DD210 pKa = 3.83NVIDD214 pKa = 5.6DD215 pKa = 5.26VIHH218 pKa = 5.91CTPNDD223 pKa = 3.57APTASNDD230 pKa = 3.44SYY232 pKa = 11.95GVDD235 pKa = 3.56EE236 pKa = 6.3DD237 pKa = 4.35GLLDD241 pKa = 3.65VSPSGVLANDD251 pKa = 3.59TDD253 pKa = 4.38PDD255 pKa = 3.94GDD257 pKa = 4.13ALTASVVSGPSNGTLNLSANGGFTYY282 pKa = 10.56EE283 pKa = 4.22PAPNFHH289 pKa = 6.79GSDD292 pKa = 3.11SFTYY296 pKa = 10.12RR297 pKa = 11.84ASDD300 pKa = 3.5GDD302 pKa = 4.07GGSDD306 pKa = 3.03TATVNISVGSVNDD319 pKa = 3.66APVFTSTPVTSATEE333 pKa = 3.93DD334 pKa = 3.2QPYY337 pKa = 10.46SYY339 pKa = 10.78LVTATDD345 pKa = 3.23VDD347 pKa = 3.99TGDD350 pKa = 3.88SLTISLATRR359 pKa = 11.84PSWLGLSLGSGGSATLSGTPSNADD383 pKa = 3.29VGPHH387 pKa = 4.61SVEE390 pKa = 3.96VVVRR394 pKa = 11.84DD395 pKa = 3.83GNGGSDD401 pKa = 3.31TQTFTIDD408 pKa = 3.34VQNVNDD414 pKa = 3.88APYY417 pKa = 10.15FVDD420 pKa = 3.98PTPQDD425 pKa = 3.27GATLSVVEE433 pKa = 4.67GDD435 pKa = 3.66TLSFTLAGADD445 pKa = 4.32DD446 pKa = 5.46DD447 pKa = 6.03GDD449 pKa = 3.89TLTYY453 pKa = 10.7GVDD456 pKa = 3.69SVPTGASFDD465 pKa = 3.71ASTGAFSWTPTWW477 pKa = 3.35

Molecular weight: 49.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Y6PTH9|A0A4Y6PTH9_9DELT Glycosyltransferase family 2 protein OS=Persicimonas caeni OX=2292766 GN=FIV42_13020 PE=4 SV=1
MM1 pKa = 8.03PKK3 pKa = 8.96RR4 pKa = 11.84TYY6 pKa = 10.02QPSRR10 pKa = 11.84KK11 pKa = 9.22KK12 pKa = 10.07RR13 pKa = 11.84RR14 pKa = 11.84KK15 pKa = 6.37THH17 pKa = 5.17GFRR20 pKa = 11.84ARR22 pKa = 11.84MKK24 pKa = 10.52SKK26 pKa = 10.66GGRR29 pKa = 11.84KK30 pKa = 5.41TLKK33 pKa = 9.62RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84SKK38 pKa = 10.47GRR40 pKa = 11.84KK41 pKa = 8.27RR42 pKa = 11.84LSPRR46 pKa = 11.84KK47 pKa = 7.85FHH49 pKa = 6.62KK50 pKa = 9.47RR51 pKa = 11.84TRR53 pKa = 11.84RR54 pKa = 11.84TT55 pKa = 3.18

Molecular weight: 6.85 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5752

0

5752

2306908

23

4216

401.1

44.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.287 ± 0.029

1.246 ± 0.026

7.343 ± 0.046

7.791 ± 0.044

3.601 ± 0.018

8.131 ± 0.034

2.112 ± 0.015

4.208 ± 0.021

3.373 ± 0.034

9.456 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.06 ± 0.014

2.71 ± 0.02

4.859 ± 0.021

3.521 ± 0.022

6.666 ± 0.04

5.749 ± 0.026

5.411 ± 0.035

7.566 ± 0.028

1.378 ± 0.015

2.532 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski