Caulobacter phage CcrBL10

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Dolichocephalovirinae; Poindextervirus; Caulobacter virus CcrBL10

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 319 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A385EC31|A0A385EC31_9CAUD Uncharacterized protein OS=Caulobacter phage CcrBL10 OX=2283269 GN=CcrBL10_gp084 PE=4 SV=1
MM1 pKa = 7.53IPAEE5 pKa = 3.97VLNPRR10 pKa = 11.84EE11 pKa = 3.92HH12 pKa = 5.88WTPVATRR19 pKa = 11.84DD20 pKa = 3.57EE21 pKa = 4.56AEE23 pKa = 4.72SIATACNASDD33 pKa = 3.76DD34 pKa = 3.75VGRR37 pKa = 11.84YY38 pKa = 7.34YY39 pKa = 11.0VEE41 pKa = 4.0PKK43 pKa = 10.25GAAFAVAYY51 pKa = 9.85DD52 pKa = 4.12DD53 pKa = 4.02EE54 pKa = 6.49SGAFVAYY61 pKa = 10.4LL62 pKa = 3.45

Molecular weight: 6.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A385EBM9|A0A385EBM9_9CAUD Uncharacterized protein OS=Caulobacter phage CcrBL10 OX=2283269 GN=CcrBL10_gp068 PE=4 SV=1
MM1 pKa = 6.98QNVPVGHH8 pKa = 7.04RR9 pKa = 11.84FTRR12 pKa = 11.84YY13 pKa = 7.61GQTYY17 pKa = 7.29VVRR20 pKa = 11.84PGLRR24 pKa = 11.84YY25 pKa = 10.04VPEE28 pKa = 4.16AQAADD33 pKa = 3.43ASRR36 pKa = 11.84RR37 pKa = 11.84GWTLQNSDD45 pKa = 4.32LKK47 pKa = 11.27ALLGWTPKK55 pKa = 10.47LPRR58 pKa = 11.84DD59 pKa = 3.33AVAPVMVGNVSVYY72 pKa = 10.36VLSAAEE78 pKa = 3.61AAARR82 pKa = 11.84KK83 pKa = 8.44PKK85 pKa = 10.22NNRR88 pKa = 11.84PHH90 pKa = 7.19RR91 pKa = 11.84VTAVCPGCAAHH102 pKa = 6.65VPAGRR107 pKa = 11.84IGQHH111 pKa = 5.04KK112 pKa = 10.09CKK114 pKa = 10.65AA115 pKa = 3.48

Molecular weight: 12.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

319

0

319

62993

41

2384

197.5

21.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.05 ± 0.196

0.916 ± 0.059

6.744 ± 0.164

6.134 ± 0.203

3.773 ± 0.101

8.487 ± 0.46

2.143 ± 0.103

4.726 ± 0.091

4.699 ± 0.189

8.095 ± 0.145

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.392 ± 0.104

3.002 ± 0.121

5.088 ± 0.13

3.264 ± 0.104

6.528 ± 0.226

5.17 ± 0.189

6.155 ± 0.27

6.955 ± 0.126

1.646 ± 0.079

3.034 ± 0.101
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski