Sulfolobus monocaudavirus SMV1

Taxonomy: Viruses; Bicaudaviridae; unclassified Bicaudaviridae

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 51 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W0UUX6|W0UUX6_9VIRU Conserved archaeal viral protein OS=Sulfolobus monocaudavirus SMV1 OX=1351702 PE=4 SV=1
MM1 pKa = 7.65GIIEE5 pKa = 5.02EE6 pKa = 4.29IQNALAYY13 pKa = 8.01YY14 pKa = 10.17QKK16 pKa = 9.75TAVDD20 pKa = 4.14EE21 pKa = 4.31NDD23 pKa = 3.1TLYY26 pKa = 11.31LHH28 pKa = 7.04NIYY31 pKa = 10.38SQLYY35 pKa = 8.26YY36 pKa = 10.13ILSVEE41 pKa = 4.05NRR43 pKa = 11.84PLNNTEE49 pKa = 4.15FDD51 pKa = 4.1SLMKK55 pKa = 10.8ALGINDD61 pKa = 3.72DD62 pKa = 3.87TLLVQEE68 pKa = 4.49YY69 pKa = 10.71QNMTDD74 pKa = 3.46EE75 pKa = 4.31QKK77 pKa = 10.87KK78 pKa = 9.17QLLMQILQMIDD89 pKa = 3.25NLMKK93 pKa = 10.7NIHH96 pKa = 5.51TMVNYY101 pKa = 10.42

Molecular weight: 11.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W0UUC6|W0UUC6_9VIRU Uncharacterized protein OS=Sulfolobus monocaudavirus SMV1 OX=1351702 PE=4 SV=1
MM1 pKa = 7.59RR2 pKa = 11.84SKK4 pKa = 9.79MRR6 pKa = 11.84QGGKK10 pKa = 7.07EE11 pKa = 3.76ARR13 pKa = 11.84GKK15 pKa = 9.71GMRR18 pKa = 11.84WSSINNISCSVNKK31 pKa = 10.35LFGQPPVQLLFTLQLMGG48 pKa = 4.35

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

51

0

51

14287

48

2028

280.1

31.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.774 ± 0.428

0.434 ± 0.121

4.011 ± 0.43

5.942 ± 0.912

4.613 ± 0.385

5.236 ± 0.586

1.043 ± 0.128

8.588 ± 0.397

6.278 ± 0.728

10.023 ± 0.515

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.862 ± 0.24

6.481 ± 0.499

3.976 ± 0.389

5.089 ± 0.765

2.898 ± 0.445

8.238 ± 0.754

6.628 ± 0.596

7.041 ± 0.42

0.798 ± 0.188

5.04 ± 0.359
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski