Coprococcus sp. CAG:782

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Lachnospiraceae; Coprococcus; environmental samples

Average proteome isoelectric point is 5.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1959 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R5JE35|R5JE35_9FIRM Uncharacterized protein OS=Coprococcus sp. CAG:782 OX=1262863 GN=BN781_01262 PE=4 SV=1
MM1 pKa = 7.43KK2 pKa = 10.33KK3 pKa = 10.21SFVRR7 pKa = 11.84RR8 pKa = 11.84AVALSMIGVMMLSGAATGCGKK29 pKa = 10.6KK30 pKa = 10.15KK31 pKa = 10.26VDD33 pKa = 3.94YY34 pKa = 11.41NIDD37 pKa = 3.78DD38 pKa = 4.02EE39 pKa = 5.2NGGSEE44 pKa = 4.11NGGSGDD50 pKa = 4.11SGEE53 pKa = 4.62LRR55 pKa = 11.84AKK57 pKa = 10.26VKK59 pKa = 10.73APEE62 pKa = 4.67SYY64 pKa = 10.17TGDD67 pKa = 3.29IPVGNSGLSSIKK79 pKa = 10.33INAEE83 pKa = 3.71KK84 pKa = 10.52IEE86 pKa = 4.21IPNASTMSVVYY97 pKa = 9.47CEE99 pKa = 4.12PLSYY103 pKa = 11.2DD104 pKa = 3.16SDD106 pKa = 4.13YY107 pKa = 11.61KK108 pKa = 10.35KK109 pKa = 9.07TLAEE113 pKa = 4.16SFFDD117 pKa = 3.62KK118 pKa = 11.11SKK120 pKa = 11.28GIYY123 pKa = 9.67KK124 pKa = 9.99YY125 pKa = 10.58DD126 pKa = 3.39YY127 pKa = 8.38EE128 pKa = 4.69KK129 pKa = 10.62PIRR132 pKa = 11.84EE133 pKa = 4.19DD134 pKa = 3.22VQKK137 pKa = 10.99EE138 pKa = 3.89LDD140 pKa = 3.76VYY142 pKa = 11.2QAMLDD147 pKa = 3.81DD148 pKa = 5.28ANAAGDD154 pKa = 3.91TEE156 pKa = 4.14NAQWIGDD163 pKa = 3.94TVNSLKK169 pKa = 10.65SDD171 pKa = 3.67LAKK174 pKa = 10.31ATDD177 pKa = 3.35EE178 pKa = 4.35RR179 pKa = 11.84EE180 pKa = 4.4PVGDD184 pKa = 4.04TYY186 pKa = 11.71DD187 pKa = 3.35SDD189 pKa = 4.86SYY191 pKa = 10.98IGYY194 pKa = 9.8IGDD197 pKa = 3.55QLYY200 pKa = 10.49EE201 pKa = 4.24LDD203 pKa = 4.08MYY205 pKa = 11.36GDD207 pKa = 3.83SSGVNGSASIAPYY220 pKa = 10.01PYY222 pKa = 9.05ITIKK226 pKa = 10.56DD227 pKa = 3.65IRR229 pKa = 11.84PHH231 pKa = 6.56DD232 pKa = 3.86DD233 pKa = 3.81CYY235 pKa = 11.28NVSYY239 pKa = 11.3YY240 pKa = 11.06GDD242 pKa = 4.56DD243 pKa = 3.66YY244 pKa = 11.95NSYY247 pKa = 11.13DD248 pKa = 5.23LEE250 pKa = 4.43NQSDD254 pKa = 3.86MTKK257 pKa = 10.92DD258 pKa = 3.32EE259 pKa = 4.35AVSYY263 pKa = 8.11ATSYY267 pKa = 10.94LADD270 pKa = 4.46LGFKK274 pKa = 10.61DD275 pKa = 5.93AMLKK279 pKa = 10.24SCSPLIWDD287 pKa = 4.0YY288 pKa = 11.82YY289 pKa = 11.14DD290 pKa = 3.47YY291 pKa = 11.68AGNTLAEE298 pKa = 4.47EE299 pKa = 4.39CDD301 pKa = 3.24GWSITFVKK309 pKa = 10.63SVDD312 pKa = 3.41NVPIYY317 pKa = 11.08SPDD320 pKa = 3.18VWNLDD325 pKa = 3.62YY326 pKa = 11.52LDD328 pKa = 4.7TNNVWYY334 pKa = 6.89TTSDD338 pKa = 3.1QTINLSIYY346 pKa = 10.02NGSAFQVNINYY357 pKa = 10.14SLNTIKK363 pKa = 10.58EE364 pKa = 4.15DD365 pKa = 3.61SDD367 pKa = 4.35VEE369 pKa = 4.16LLSWDD374 pKa = 4.68EE375 pKa = 4.06ILKK378 pKa = 10.35SAQEE382 pKa = 4.52KK383 pKa = 10.38IPEE386 pKa = 4.24FYY388 pKa = 10.66KK389 pKa = 10.9DD390 pKa = 3.36NKK392 pKa = 9.7TSYY395 pKa = 11.33LDD397 pKa = 3.93LEE399 pKa = 4.21FDD401 pKa = 3.96KK402 pKa = 11.65VKK404 pKa = 9.77LTYY407 pKa = 10.29FRR409 pKa = 11.84VKK411 pKa = 10.97DD412 pKa = 3.61EE413 pKa = 4.56DD414 pKa = 3.66TTGQYY419 pKa = 11.65KK420 pKa = 10.53LIPVWAFISTSYY432 pKa = 11.19GDD434 pKa = 3.95EE435 pKa = 4.29EE436 pKa = 6.54GDD438 pKa = 3.38TSTEE442 pKa = 3.74EE443 pKa = 3.97DD444 pKa = 3.76TEE446 pKa = 4.19EE447 pKa = 4.16DD448 pKa = 3.89TEE450 pKa = 4.63DD451 pKa = 3.52SAFEE455 pKa = 4.23DD456 pKa = 4.04SYY458 pKa = 10.4PTQLILINAMDD469 pKa = 4.47GSLIDD474 pKa = 3.61VASQLEE480 pKa = 4.48GEE482 pKa = 4.93SNDD485 pKa = 3.59SDD487 pKa = 4.58DD488 pKa = 4.08VTSSTISDD496 pKa = 3.71DD497 pKa = 3.48GSFAVEE503 pKa = 4.18KK504 pKa = 10.52EE505 pKa = 3.77VDD507 pKa = 3.36EE508 pKa = 5.91GDD510 pKa = 3.52IQQ512 pKa = 4.11

Molecular weight: 56.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R5JYM3|R5JYM3_9FIRM Radical SAM protein TIGR01212 family OS=Coprococcus sp. CAG:782 OX=1262863 GN=BN781_00598 PE=4 SV=1
MM1 pKa = 7.67KK2 pKa = 8.72MTFQPKK8 pKa = 8.95KK9 pKa = 7.58RR10 pKa = 11.84QRR12 pKa = 11.84SKK14 pKa = 9.07VHH16 pKa = 5.95GFRR19 pKa = 11.84KK20 pKa = 10.0RR21 pKa = 11.84MSTANGRR28 pKa = 11.84KK29 pKa = 8.89VLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.1GRR39 pKa = 11.84KK40 pKa = 8.83KK41 pKa = 10.63LSAA44 pKa = 3.95

Molecular weight: 5.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1959

0

1959

659125

30

2014

336.5

37.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.285 ± 0.051

1.466 ± 0.023

6.666 ± 0.054

7.114 ± 0.06

3.883 ± 0.038

7.204 ± 0.048

1.565 ± 0.022

7.875 ± 0.054

7.193 ± 0.047

8.069 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.163 ± 0.031

4.958 ± 0.04

2.947 ± 0.027

2.383 ± 0.027

4.174 ± 0.044

5.884 ± 0.042

5.487 ± 0.057

7.382 ± 0.045

0.723 ± 0.015

4.575 ± 0.046
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski