Devosia sp. Root413D1

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Devosiaceae; Devosia; unclassified Devosia

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5472 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0Q7DLJ2|A0A0Q7DLJ2_9RHIZ Succinylglutamate desuccinylase OS=Devosia sp. Root413D1 OX=1736531 GN=ASC89_26410 PE=4 SV=1
MM1 pKa = 7.27NRR3 pKa = 11.84FSLSLLAGVAVLSMASAASAADD25 pKa = 4.06LLVQQPSMPGFVDD38 pKa = 3.49MGSSGAWDD46 pKa = 3.6GAYY49 pKa = 9.48IGGFVGYY56 pKa = 9.9GWGSANDD63 pKa = 3.81DD64 pKa = 3.47SGLFILGNDD73 pKa = 3.39MDD75 pKa = 4.69LSGWTAGATLGANFTVAQGFVLGAAGDD102 pKa = 4.02IAWAGIGGFEE112 pKa = 5.24APSQDD117 pKa = 4.49VDD119 pKa = 4.06INWTGSLRR127 pKa = 11.84GKK129 pKa = 10.49AGFDD133 pKa = 3.01AGAFMPYY140 pKa = 8.87LTAGLAFAGATASNGPTDD158 pKa = 3.62STQMHH163 pKa = 6.84FGWTAGAGVEE173 pKa = 4.46VAVADD178 pKa = 4.58QISLDD183 pKa = 3.54LQYY186 pKa = 10.74RR187 pKa = 11.84YY188 pKa = 10.3SDD190 pKa = 3.88YY191 pKa = 10.89GTATYY196 pKa = 10.47DD197 pKa = 3.62LPTNPEE203 pKa = 4.06LDD205 pKa = 3.38ISTHH209 pKa = 5.52AVTAGVNFKK218 pKa = 10.65FF219 pKa = 4.41

Molecular weight: 22.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0Q7DSR7|A0A0Q7DSR7_9RHIZ Uncharacterized protein OS=Devosia sp. Root413D1 OX=1736531 GN=ASC89_14175 PE=4 SV=1
MM1 pKa = 7.31MPTPRR6 pKa = 11.84LRR8 pKa = 11.84PKK10 pKa = 10.49QPSLPNANASAHH22 pKa = 5.08PTCNNVSPSPQAPPQSSSLRR42 pKa = 11.84RR43 pKa = 11.84PPKK46 pKa = 10.13KK47 pKa = 9.29PRR49 pKa = 11.84HH50 pKa = 5.29RR51 pKa = 11.84LKK53 pKa = 10.71SPRR56 pKa = 11.84RR57 pKa = 11.84QPRR60 pKa = 11.84SQRR63 pKa = 11.84LLLKK67 pKa = 10.27NRR69 pKa = 11.84HH70 pKa = 5.41LPRR73 pKa = 11.84LRR75 pKa = 11.84NRR77 pKa = 11.84PLPLNSLLQQSRR89 pKa = 11.84PRR91 pKa = 11.84LLNNPPSRR99 pKa = 11.84LLPNSPPLPRR109 pKa = 11.84SSLPLPWSSLQLPLNSRR126 pKa = 11.84RR127 pKa = 11.84PAIRR131 pKa = 11.84RR132 pKa = 3.55

Molecular weight: 15.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5472

0

5472

1690778

27

9846

309.0

33.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.577 ± 0.049

0.629 ± 0.01

5.644 ± 0.04

5.59 ± 0.032

3.859 ± 0.026

8.805 ± 0.045

1.925 ± 0.017

5.323 ± 0.025

3.171 ± 0.029

10.437 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.347 ± 0.019

2.73 ± 0.028

5.114 ± 0.031

3.074 ± 0.017

6.413 ± 0.039

5.364 ± 0.026

5.526 ± 0.035

7.7 ± 0.025

1.429 ± 0.016

2.341 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski