Bombiscardovia coagulans

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Bifidobacteriales; Bifidobacteriaceae; Bombiscardovia

Average proteome isoelectric point is 6.25

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1438 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A261ESU0|A0A261ESU0_9BIFI Uridylate kinase OS=Bombiscardovia coagulans OX=686666 GN=pyrH PE=3 SV=1
MM1 pKa = 7.9DD2 pKa = 4.92NEE4 pKa = 4.42GKK6 pKa = 10.07NLGKK10 pKa = 10.51VFAIYY15 pKa = 10.39NSEE18 pKa = 4.05YY19 pKa = 9.82PVFGIEE25 pKa = 4.65FIRR28 pKa = 11.84VEE30 pKa = 4.95DD31 pKa = 3.6EE32 pKa = 3.9DD33 pKa = 3.74QIYY36 pKa = 10.17EE37 pKa = 4.21VAQQSSEE44 pKa = 4.06LFNDD48 pKa = 3.42EE49 pKa = 4.52EE50 pKa = 4.92IDD52 pKa = 3.96VIRR55 pKa = 11.84EE56 pKa = 3.51RR57 pKa = 11.84LIAIRR62 pKa = 11.84VEE64 pKa = 4.0YY65 pKa = 10.7LDD67 pKa = 5.65DD68 pKa = 5.04YY69 pKa = 11.64EE70 pKa = 6.37DD71 pKa = 4.95LDD73 pKa = 4.45SPDD76 pKa = 4.17AIKK79 pKa = 10.4AYY81 pKa = 10.02SQYY84 pKa = 10.63GWQTSEE90 pKa = 4.59SEE92 pKa = 4.24LVPDD96 pKa = 5.34GSLSDD101 pKa = 4.11GDD103 pKa = 4.72SISNSDD109 pKa = 3.42LSTYY113 pKa = 10.61QEE115 pKa = 4.1DD116 pKa = 3.96QYY118 pKa = 11.94DD119 pKa = 4.06RR120 pKa = 11.84CEE122 pKa = 3.65TTYY125 pKa = 10.7PDD127 pKa = 4.07KK128 pKa = 11.15YY129 pKa = 11.25NPGAVEE135 pKa = 3.76AA136 pKa = 4.85

Molecular weight: 15.6 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A261EQP2|A0A261EQP2_9BIFI Thioredoxin reductase OS=Bombiscardovia coagulans OX=686666 GN=BOCO_0989 PE=3 SV=1
MM1 pKa = 7.52AVLTGALNMKK11 pKa = 9.16RR12 pKa = 11.84TFQPNNRR19 pKa = 11.84RR20 pKa = 11.84RR21 pKa = 11.84HH22 pKa = 4.79MKK24 pKa = 9.36HH25 pKa = 5.81GFRR28 pKa = 11.84ARR30 pKa = 11.84MRR32 pKa = 11.84TRR34 pKa = 11.84SGRR37 pKa = 11.84ALINRR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84AKK46 pKa = 10.08GRR48 pKa = 11.84KK49 pKa = 8.87SLSAA53 pKa = 3.86

Molecular weight: 6.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1438

0

1438

505083

29

3148

351.2

38.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.439 ± 0.056

0.95 ± 0.022

5.893 ± 0.054

5.466 ± 0.06

3.389 ± 0.038

7.477 ± 0.063

2.368 ± 0.033

5.717 ± 0.059

4.187 ± 0.056

9.329 ± 0.08

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.455 ± 0.029

3.551 ± 0.04

4.609 ± 0.041

4.797 ± 0.049

5.345 ± 0.054

7.314 ± 0.055

5.876 ± 0.05

7.67 ± 0.061

1.411 ± 0.028

2.757 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski