Cervus elaphus papillomavirus 2

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Xipapillomavirus; Xipapillomavirus 5

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I9KHZ0|A0A1I9KHZ0_9PAPI Replication protein E1 OS=Cervus elaphus papillomavirus 2 OX=1747359 GN=E1 PE=3 SV=1
MM1 pKa = 7.73RR2 pKa = 11.84GDD4 pKa = 4.04KK5 pKa = 9.39PTISDD10 pKa = 3.28IALDD14 pKa = 4.36LEE16 pKa = 4.68QIVCPVSLEE25 pKa = 4.31CNEE28 pKa = 4.07TMSPEE33 pKa = 3.94EE34 pKa = 4.8AEE36 pKa = 4.34AALQFPYY43 pKa = 10.3RR44 pKa = 11.84VATSCSGCNKK54 pKa = 9.41EE55 pKa = 3.98LHH57 pKa = 6.45LFVAATEE64 pKa = 3.97EE65 pKa = 4.93GIRR68 pKa = 11.84SLEE71 pKa = 3.81VSLIGDD77 pKa = 4.25KK78 pKa = 11.13LSLLCGRR85 pKa = 11.84CARR88 pKa = 11.84VIFSNGQRR96 pKa = 3.41

Molecular weight: 10.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I9KHZ8|A0A1I9KHZ8_9PAPI Regulatory protein E2 OS=Cervus elaphus papillomavirus 2 OX=1747359 GN=E2 PE=3 SV=1
MM1 pKa = 7.79EE2 pKa = 4.97NLQARR7 pKa = 11.84FDD9 pKa = 4.01VVQEE13 pKa = 3.98KK14 pKa = 10.65LMEE17 pKa = 4.76IYY19 pKa = 10.46EE20 pKa = 4.48SDD22 pKa = 3.41VQTIDD27 pKa = 3.15KK28 pKa = 10.63QIEE31 pKa = 3.74HH32 pKa = 6.42WQTVRR37 pKa = 11.84LEE39 pKa = 4.02QVLLFVARR47 pKa = 11.84KK48 pKa = 9.85KK49 pKa = 11.0GITRR53 pKa = 11.84MGLQVVPPTAVSEE66 pKa = 4.19ARR68 pKa = 11.84AKK70 pKa = 10.55NAIEE74 pKa = 3.89MVLVLEE80 pKa = 4.28RR81 pKa = 11.84LKK83 pKa = 11.19DD84 pKa = 3.52SAYY87 pKa = 9.45GTEE90 pKa = 4.48KK91 pKa = 8.78WTLTDD96 pKa = 4.21SSRR99 pKa = 11.84EE100 pKa = 4.09TYY102 pKa = 9.83KK103 pKa = 10.85AAPEE107 pKa = 3.96DD108 pKa = 4.04TFKK111 pKa = 10.97KK112 pKa = 10.01RR113 pKa = 11.84PASVTVIYY121 pKa = 10.94DD122 pKa = 3.51GDD124 pKa = 4.1AYY126 pKa = 11.64NSMIYY131 pKa = 9.5TMWRR135 pKa = 11.84DD136 pKa = 2.91IYY138 pKa = 11.51YY139 pKa = 10.51EE140 pKa = 5.5DD141 pKa = 3.34DD142 pKa = 3.98TGWHH146 pKa = 6.18KK147 pKa = 11.07VPSQVDD153 pKa = 3.77YY154 pKa = 11.51YY155 pKa = 11.05GIYY158 pKa = 10.09YY159 pKa = 9.81VDD161 pKa = 4.0HH162 pKa = 6.82EE163 pKa = 4.86GEE165 pKa = 3.79KK166 pKa = 10.2KK167 pKa = 10.82YY168 pKa = 11.19YY169 pKa = 10.57VLFEE173 pKa = 4.74KK174 pKa = 10.92DD175 pKa = 2.72ADD177 pKa = 4.0LYY179 pKa = 11.26SRR181 pKa = 11.84NGQWEE186 pKa = 4.25VQFEE190 pKa = 4.17NMQFSAPVTSSTTGSSRR207 pKa = 11.84HH208 pKa = 5.32GPEE211 pKa = 3.7TASTRR216 pKa = 11.84EE217 pKa = 4.05DD218 pKa = 3.61PQASSAGPPAARR230 pKa = 11.84PRR232 pKa = 11.84QPASPTRR239 pKa = 11.84RR240 pKa = 11.84RR241 pKa = 11.84HH242 pKa = 5.13RR243 pKa = 11.84APLVSSLLSHH253 pKa = 6.4RR254 pKa = 11.84RR255 pKa = 11.84SRR257 pKa = 11.84SRR259 pKa = 11.84SGSSRR264 pKa = 11.84SSRR267 pKa = 11.84SSRR270 pKa = 11.84SSRR273 pKa = 11.84SRR275 pKa = 11.84SPAKK279 pKa = 9.81RR280 pKa = 11.84PRR282 pKa = 11.84RR283 pKa = 11.84RR284 pKa = 11.84GRR286 pKa = 11.84RR287 pKa = 11.84GRR289 pKa = 11.84RR290 pKa = 11.84VARR293 pKa = 11.84SGSRR297 pKa = 11.84GSSSDD302 pKa = 3.09SSRR305 pKa = 11.84TEE307 pKa = 3.69PGGQSPPSPEE317 pKa = 3.86QVGEE321 pKa = 4.08RR322 pKa = 11.84SRR324 pKa = 11.84LPPRR328 pKa = 11.84EE329 pKa = 3.8ASSRR333 pKa = 11.84LARR336 pKa = 11.84LISEE340 pKa = 4.38ARR342 pKa = 11.84DD343 pKa = 3.54PPVLLVKK350 pKa = 10.59GSPNVLRR357 pKa = 11.84CWRR360 pKa = 11.84RR361 pKa = 11.84RR362 pKa = 11.84CRR364 pKa = 11.84LRR366 pKa = 11.84YY367 pKa = 8.78SAYY370 pKa = 8.34FQSMTTTFTWISGHH384 pKa = 4.82STDD387 pKa = 4.15RR388 pKa = 11.84LGGNRR393 pKa = 11.84MLVGFADD400 pKa = 4.7TIQRR404 pKa = 11.84NEE406 pKa = 4.06FLNKK410 pKa = 9.02VKK412 pKa = 10.01MPKK415 pKa = 9.85RR416 pKa = 11.84VTWAYY421 pKa = 10.37GALDD425 pKa = 3.61TFF427 pKa = 4.81

Molecular weight: 48.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2297

96

601

382.8

43.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.834 ± 0.637

2.264 ± 0.81

5.921 ± 0.338

6.182 ± 0.401

4.615 ± 0.482

6.487 ± 0.692

1.785 ± 0.093

4.441 ± 0.675

5.05 ± 0.612

8.489 ± 0.807

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.48 ± 0.227

4.179 ± 0.614

6.313 ± 0.847

4.136 ± 0.331

7.357 ± 1.216

8.098 ± 0.872

6.356 ± 0.556

6.051 ± 0.284

1.524 ± 0.311

3.439 ± 0.306
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski