Cellulomonas marina

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Cellulomonadaceae; Cellulomonas

Average proteome isoelectric point is 6.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3460 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I0VWE3|A0A1I0VWE3_9CELL Deoxyguanosinetriphosphate triphosphohydrolase-like protein OS=Cellulomonas marina OX=988821 GN=SAMN05421867_1026 PE=3 SV=1
MM1 pKa = 7.54RR2 pKa = 11.84RR3 pKa = 11.84ITSTVAMMAGVTLLAAACSGGGGSTSAEE31 pKa = 4.01EE32 pKa = 4.53SPSSSAAAEE41 pKa = 4.07PSASEE46 pKa = 3.7SAPPVRR52 pKa = 11.84GDD54 pKa = 3.45EE55 pKa = 4.27EE56 pKa = 4.42LVIWTDD62 pKa = 3.26ALKK65 pKa = 10.74LDD67 pKa = 4.01AVRR70 pKa = 11.84AVADD74 pKa = 4.0QFAEE78 pKa = 4.4DD79 pKa = 3.34NGITVGVQAIVNTRR93 pKa = 11.84TDD95 pKa = 4.61FITANAAGNGPDD107 pKa = 3.73VVVGAHH113 pKa = 6.32DD114 pKa = 4.31WIGQLVQNGAIDD126 pKa = 4.17PLQLSAADD134 pKa = 3.58LGGYY138 pKa = 9.69AEE140 pKa = 4.35NAIQAVTYY148 pKa = 10.18DD149 pKa = 3.52GQIYY153 pKa = 8.83GLPYY157 pKa = 10.14GVEE160 pKa = 4.19ALGLYY165 pKa = 9.65CNKK168 pKa = 10.25AYY170 pKa = 10.42APDD173 pKa = 4.16TYY175 pKa = 11.55ASLDD179 pKa = 3.66DD180 pKa = 4.73VIAAGQAAVDD190 pKa = 3.93AGQVEE195 pKa = 4.59TSLNVAQGDD204 pKa = 3.87VGDD207 pKa = 4.78AYY209 pKa = 11.03HH210 pKa = 6.15MQPILTSMGGYY221 pKa = 10.64LFGQNPDD228 pKa = 2.88GTYY231 pKa = 10.68NPEE234 pKa = 4.24DD235 pKa = 4.26LGLASPGGLAAAQKK249 pKa = 10.37IFDD252 pKa = 4.55LGEE255 pKa = 3.83QGSNVLRR262 pKa = 11.84RR263 pKa = 11.84SISGDD268 pKa = 2.89NSIALFAEE276 pKa = 4.75GRR278 pKa = 11.84AACLISGPWALADD291 pKa = 3.48VRR293 pKa = 11.84EE294 pKa = 4.25GLGEE298 pKa = 4.59DD299 pKa = 5.04GYY301 pKa = 9.33TLQPIPGFAGQQPAQPFLGAQAFYY325 pKa = 11.1VAANGQNKK333 pKa = 7.95TFAQEE338 pKa = 3.93FVTNGVNNAEE348 pKa = 4.49GMTTMYY354 pKa = 10.51EE355 pKa = 4.15LANLPPALTEE365 pKa = 4.0VRR367 pKa = 11.84QSIAADD373 pKa = 3.42NPDD376 pKa = 3.61FEE378 pKa = 5.38VFAQAADD385 pKa = 3.65NGNPMPAVPAMAEE398 pKa = 3.68VWAPLGQAYY407 pKa = 10.14SAIIGGADD415 pKa = 3.58PASTMQQAQDD425 pKa = 3.79TIAAAIAASS434 pKa = 3.48

Molecular weight: 44.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I0XJB0|A0A1I0XJB0_9CELL 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Cellulomonas marina OX=988821 GN=menD PE=3 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3460

0

3460

1193049

30

2100

344.8

36.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

15.438 ± 0.07

0.535 ± 0.011

6.375 ± 0.031

5.198 ± 0.039

2.227 ± 0.025

9.9 ± 0.045

2.095 ± 0.019

2.104 ± 0.029

1.113 ± 0.021

10.608 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.355 ± 0.017

1.224 ± 0.018

6.364 ± 0.042

2.501 ± 0.023

8.361 ± 0.043

4.462 ± 0.03

6.347 ± 0.042

10.65 ± 0.047

1.505 ± 0.018

1.638 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski