Lactobacillus coleohominis DSM 14060

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus; Limosilactobacillus coleohominis

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1715 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R2BRD4|A0A0R2BRD4_9LACO Uncharacterized protein OS=Lactobacillus coleohominis DSM 14060 OX=887896 GN=FC35_GL000325 PE=4 SV=1
MM1 pKa = 7.5FSIPDD6 pKa = 3.56GAEE9 pKa = 3.8LLFSSDD15 pKa = 3.33LVTNQGFVLDD25 pKa = 4.46NMVGLQFHH33 pKa = 6.77FEE35 pKa = 3.96PLADD39 pKa = 3.56NVRR42 pKa = 11.84EE43 pKa = 3.94IVVNDD48 pKa = 3.65GEE50 pKa = 4.43YY51 pKa = 11.16ALDD54 pKa = 4.74HH55 pKa = 6.94NDD57 pKa = 3.17LHH59 pKa = 5.39QTPAEE64 pKa = 4.49IIDD67 pKa = 3.75HH68 pKa = 6.25GVPAEE73 pKa = 4.05NQQVMFTILDD83 pKa = 3.95YY84 pKa = 11.2LSHH87 pKa = 5.98QQ88 pKa = 3.65

Molecular weight: 9.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R2BYL6|A0A0R2BYL6_9LACO PTS_EIIC domain-containing protein OS=Lactobacillus coleohominis DSM 14060 OX=887896 GN=FC35_GL000712 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.6RR3 pKa = 11.84TFQPKK8 pKa = 8.02KK9 pKa = 7.4RR10 pKa = 11.84HH11 pKa = 5.36RR12 pKa = 11.84ARR14 pKa = 11.84VHH16 pKa = 5.72GFRR19 pKa = 11.84ARR21 pKa = 11.84MSTSNGRR28 pKa = 11.84KK29 pKa = 8.01VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 10.39GRR39 pKa = 11.84KK40 pKa = 8.52VLSAA44 pKa = 4.05

Molecular weight: 5.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1715

0

1715

346657

38

1501

202.1

22.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.337 ± 0.071

0.668 ± 0.02

5.917 ± 0.069

5.139 ± 0.058

4.182 ± 0.056

6.523 ± 0.062

2.498 ± 0.037

7.047 ± 0.078

6.482 ± 0.072

9.35 ± 0.082

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.987 ± 0.039

5.265 ± 0.062

3.634 ± 0.043

4.969 ± 0.066

4.243 ± 0.063

5.663 ± 0.057

5.923 ± 0.062

7.044 ± 0.054

1.205 ± 0.026

3.737 ± 0.041
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski