Cochleicola gelatinilyticus

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cochleicola

Average proteome isoelectric point is 6.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2962 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A167G804|A0A167G804_9FLAO tRNA modification GTPase MnmE OS=Cochleicola gelatinilyticus OX=1763537 GN=mnmE PE=3 SV=1
MM1 pKa = 7.61KK2 pKa = 10.4KK3 pKa = 10.27LLYY6 pKa = 10.56LFVSGLILASCSVDD20 pKa = 3.31QPEE23 pKa = 4.39TSEE26 pKa = 4.42SNADD30 pKa = 3.64LAYY33 pKa = 10.49DD34 pKa = 4.46ASTLDD39 pKa = 3.63ASSLGNYY46 pKa = 9.35KK47 pKa = 10.64GVFTTNNSDD56 pKa = 3.05YY57 pKa = 10.46RR58 pKa = 11.84ATVEE62 pKa = 3.88IDD64 pKa = 3.24VPYY67 pKa = 10.39FNSEE71 pKa = 3.65NTTKK75 pKa = 10.52QKK77 pKa = 10.73SYY79 pKa = 8.8PTALVSLQNGKK90 pKa = 10.09SFVATANRR98 pKa = 11.84NISLGEE104 pKa = 4.29EE105 pKa = 3.7ITKK108 pKa = 10.73LEE110 pKa = 4.12FSGSEE115 pKa = 3.69MSFKK119 pKa = 10.77FSVNDD124 pKa = 4.34DD125 pKa = 3.64GTSPIITDD133 pKa = 3.33VNYY136 pKa = 10.85KK137 pKa = 9.35NLKK140 pKa = 10.01GDD142 pKa = 3.42ILVAKK147 pKa = 7.87NTSFAPVTTFTGTYY161 pKa = 9.93QCFQCGNSEE170 pKa = 3.85PRR172 pKa = 11.84TWNVVISGDD181 pKa = 3.37ATGDD185 pKa = 3.24QTYY188 pKa = 8.26ATQVEE193 pKa = 5.03FNGNTYY199 pKa = 10.78SGGQGLQEE207 pKa = 4.01NCVVDD212 pKa = 4.01GTNSDD217 pKa = 3.18ITFCTSRR224 pKa = 11.84SGDD227 pKa = 3.18AGSNVGFMVGSNAVEE242 pKa = 4.15WEE244 pKa = 4.01GQMGYY249 pKa = 10.84SNSAPDD255 pKa = 4.0CSSQVGFWYY264 pKa = 9.82FKK266 pKa = 10.68RR267 pKa = 11.84GLEE270 pKa = 4.18GQKK273 pKa = 10.51SGTFKK278 pKa = 10.45TDD280 pKa = 2.43AMNPEE285 pKa = 4.23SPNCFTRR292 pKa = 11.84LAFEE296 pKa = 4.25NFEE299 pKa = 5.46DD300 pKa = 3.92DD301 pKa = 3.27TLMYY305 pKa = 7.42TTSEE309 pKa = 4.34PEE311 pKa = 4.04FTSGNDD317 pKa = 3.37DD318 pKa = 3.58YY319 pKa = 11.11FTRR322 pKa = 11.84TDD324 pKa = 3.25GSNIGASFNNFSNLIGNGYY343 pKa = 9.23FAAQDD348 pKa = 3.25VDD350 pKa = 4.06SQIGIPAYY358 pKa = 10.02IMFEE362 pKa = 4.3NINIASFSTVYY373 pKa = 10.68VDD375 pKa = 5.22ASFAEE380 pKa = 4.87DD381 pKa = 3.5DD382 pKa = 4.26ASNNDD387 pKa = 3.78EE388 pKa = 5.32DD389 pKa = 4.84WDD391 pKa = 3.93NTDD394 pKa = 3.33NVIMEE399 pKa = 4.01YY400 pKa = 10.81SFDD403 pKa = 3.78GTNWTPILAITNDD416 pKa = 3.17GSQFNSAPQIDD427 pKa = 3.95TDD429 pKa = 3.97FDD431 pKa = 4.22GVGDD435 pKa = 3.85GVIITEE441 pKa = 4.53TFQDD445 pKa = 3.47FRR447 pKa = 11.84VAFNNNVANNPTASGTVAIRR467 pKa = 11.84IAINLNAGDD476 pKa = 4.12EE477 pKa = 4.88DD478 pKa = 3.85IAIDD482 pKa = 3.89NILIRR487 pKa = 11.84GYY489 pKa = 11.05

Molecular weight: 53.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A167H472|A0A167H472_9FLAO tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase MtaB OS=Cochleicola gelatinilyticus OX=1763537 GN=ULVI_12020 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSKK10 pKa = 9.13RR11 pKa = 11.84KK12 pKa = 9.48RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 9.49HH17 pKa = 3.94GFRR20 pKa = 11.84EE21 pKa = 4.18RR22 pKa = 11.84MASVNGRR29 pKa = 11.84KK30 pKa = 9.17VLAARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.87GRR40 pKa = 11.84KK41 pKa = 8.56KK42 pKa = 10.21ISVSSEE48 pKa = 3.74TRR50 pKa = 11.84HH51 pKa = 5.96KK52 pKa = 10.68KK53 pKa = 9.8

Molecular weight: 6.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2962

0

2962

1004104

50

3207

339.0

38.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.678 ± 0.033

0.714 ± 0.016

5.514 ± 0.034

6.986 ± 0.044

5.202 ± 0.037

6.527 ± 0.059

1.756 ± 0.022

7.589 ± 0.039

7.268 ± 0.069

9.208 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.154 ± 0.022

5.895 ± 0.046

3.47 ± 0.03

3.418 ± 0.028

3.594 ± 0.031

6.492 ± 0.033

6.309 ± 0.05

6.314 ± 0.035

0.977 ± 0.016

3.937 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski