Bifidobacterium actinocoloniiforme DSM 22766

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium actinocoloniiforme

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1484 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A086Z1J3|A0A086Z1J3_9BIFI Phage protein OS=Bifidobacterium actinocoloniiforme DSM 22766 OX=1437605 GN=BACT_1095 PE=4 SV=1
MM1 pKa = 7.9LDD3 pKa = 3.34INKK6 pKa = 9.74SAQAYY11 pKa = 8.15KK12 pKa = 10.63AYY14 pKa = 9.09LTEE17 pKa = 4.11EE18 pKa = 4.15TGVLDD23 pKa = 5.72GEE25 pKa = 4.89DD26 pKa = 3.45EE27 pKa = 4.17TLLVGFHH34 pKa = 6.79LGYY37 pKa = 10.19KK38 pKa = 8.79QAEE41 pKa = 4.29SDD43 pKa = 4.14CALTVDD49 pKa = 5.06NIDD52 pKa = 3.6EE53 pKa = 4.41AAQTIYY59 pKa = 11.05EE60 pKa = 4.28SLRR63 pKa = 11.84DD64 pKa = 3.76SGQALCNDD72 pKa = 3.52SWAGEE77 pKa = 4.07APVAKK82 pKa = 10.08DD83 pKa = 3.59AYY85 pKa = 9.75RR86 pKa = 11.84QAAEE90 pKa = 3.64TALRR94 pKa = 11.84GFLGWQGPNDD104 pKa = 3.99GVYY107 pKa = 10.41AAAQGVSNEE116 pKa = 3.91

Molecular weight: 12.44 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A086YVS4|A0A086YVS4_9BIFI RCC1 repeat-containing protein OS=Bifidobacterium actinocoloniiforme DSM 22766 OX=1437605 GN=BACT_0280 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 9.6RR3 pKa = 11.84TFQPNNRR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84HH13 pKa = 4.79MKK15 pKa = 9.36HH16 pKa = 5.81GFRR19 pKa = 11.84ARR21 pKa = 11.84MRR23 pKa = 11.84TRR25 pKa = 11.84SGRR28 pKa = 11.84ALINRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.1GRR39 pKa = 11.84KK40 pKa = 6.41TLSAA44 pKa = 4.15

Molecular weight: 5.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1484

0

1484

526225

29

3129

354.6

38.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.18 ± 0.078

0.865 ± 0.02

6.2 ± 0.062

5.438 ± 0.069

3.198 ± 0.043

8.721 ± 0.06

1.966 ± 0.027

4.788 ± 0.054

3.712 ± 0.056

9.392 ± 0.078

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.431 ± 0.027

2.74 ± 0.043

5.11 ± 0.048

4.285 ± 0.045

6.557 ± 0.072

6.73 ± 0.056

5.337 ± 0.054

7.356 ± 0.048

1.407 ± 0.028

2.586 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski