Aeromonas phage CC2

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Emmerichvirinae; Ceceduovirus; Aeromonas virus CC2

Average proteome isoelectric point is 5.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 427 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I6WBN7|I6WBN7_9CAUD Uncharacterized protein OS=Aeromonas phage CC2 OX=1204516 GN=CC2_028 PE=4 SV=1
MM1 pKa = 7.29NRR3 pKa = 11.84IDD5 pKa = 3.77VEE7 pKa = 4.18LEE9 pKa = 3.62ARR11 pKa = 11.84GVEE14 pKa = 3.77ISGGYY19 pKa = 9.18GHH21 pKa = 7.62DD22 pKa = 3.45PYY24 pKa = 10.87IYY26 pKa = 9.68LTLDD30 pKa = 3.13QVDD33 pKa = 4.82PEE35 pKa = 4.29PVMNSISISEE45 pKa = 4.73FISHH49 pKa = 7.41FGDD52 pKa = 3.55SDD54 pKa = 3.75VLSYY58 pKa = 7.99FTIQDD63 pKa = 3.29ILAHH67 pKa = 6.26FGEE70 pKa = 4.75SEE72 pKa = 4.2LLAAMDD78 pKa = 4.0TQTIMDD84 pKa = 4.51ALL86 pKa = 4.05

Molecular weight: 9.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I6WBF5|I6WBF5_9CAUD Uncharacterized protein OS=Aeromonas phage CC2 OX=1204516 GN=CC2_233 PE=4 SV=1
MM1 pKa = 7.79AKK3 pKa = 9.53QKK5 pKa = 10.84KK6 pKa = 8.93AVQKK10 pKa = 10.79VEE12 pKa = 4.18EE13 pKa = 4.32KK14 pKa = 10.8KK15 pKa = 9.38LTGRR19 pKa = 11.84QGYY22 pKa = 8.4KK23 pKa = 9.54RR24 pKa = 11.84KK25 pKa = 10.5SNGRR29 pKa = 11.84VDD31 pKa = 3.56QFGDD35 pKa = 3.28ALRR38 pKa = 11.84ARR40 pKa = 11.84VRR42 pKa = 11.84RR43 pKa = 11.84AMKK46 pKa = 10.74AEE48 pKa = 3.8AFASKK53 pKa = 10.25SLSHH57 pKa = 6.03GTRR60 pKa = 11.84EE61 pKa = 4.13EE62 pKa = 3.89ATQASTFKK70 pKa = 10.92FF71 pKa = 3.65

Molecular weight: 8.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

427

0

427

72370

36

1329

169.5

19.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.979 ± 0.165

1.331 ± 0.064

6.91 ± 0.117

7.152 ± 0.16

4.676 ± 0.096

6.337 ± 0.143

2.03 ± 0.068

7.18 ± 0.112

7.647 ± 0.191

6.912 ± 0.104

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.268 ± 0.097

5.511 ± 0.131

3.174 ± 0.079

2.983 ± 0.064

4.295 ± 0.079

6.49 ± 0.136

5.653 ± 0.183

7.47 ± 0.101

1.412 ± 0.057

4.592 ± 0.11
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski