Xinzhou partiti-like virus 1

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KLW6|A0A1L3KLW6_9VIRU RdRp OS=Xinzhou partiti-like virus 1 OX=1923776 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 10.44RR4 pKa = 11.84PAEE7 pKa = 4.09PAFGTPAKK15 pKa = 10.79VMAGDD20 pKa = 3.58SADD23 pKa = 3.08AHH25 pKa = 5.88TEE27 pKa = 3.75VSGVIGQDD35 pKa = 3.12NPVPAPRR42 pKa = 11.84RR43 pKa = 11.84QSANKK48 pKa = 9.04QQLLDD53 pKa = 3.81SEE55 pKa = 4.71LASRR59 pKa = 11.84PKK61 pKa = 10.45PEE63 pKa = 4.16EE64 pKa = 3.71LNILRR69 pKa = 11.84TYY71 pKa = 10.23ASNVIGPTPCHH82 pKa = 6.26SDD84 pKa = 2.55IYY86 pKa = 11.25VLYY89 pKa = 9.49THH91 pKa = 7.16TALDD95 pKa = 3.71AFAKK99 pKa = 10.11LVRR102 pKa = 11.84RR103 pKa = 11.84QILNTLYY110 pKa = 10.13PDD112 pKa = 4.6GDD114 pKa = 4.07FLPQGVCSEE123 pKa = 4.37EE124 pKa = 3.89DD125 pKa = 3.1WVIVVQYY132 pKa = 10.01ILKK135 pKa = 10.41SRR137 pKa = 11.84IDD139 pKa = 3.68LVYY142 pKa = 10.81ANYY145 pKa = 10.24SGRR148 pKa = 11.84RR149 pKa = 11.84PPDD152 pKa = 3.1RR153 pKa = 11.84VPLVRR158 pKa = 11.84IVMPRR163 pKa = 11.84SIASLINGIGVKK175 pKa = 9.31QVFHH179 pKa = 7.11GNFSVCPQPGDD190 pKa = 3.68PPVDD194 pKa = 3.26RR195 pKa = 11.84ATWLINLATHH205 pKa = 7.05ARR207 pKa = 11.84IQSFSNLVLAALQRR221 pKa = 11.84GVIHH225 pKa = 7.31PGTASNLVEE234 pKa = 4.17GTGWWLLYY242 pKa = 10.25AANSTNRR249 pKa = 11.84GQIATIDD256 pKa = 3.97TQSVTVWAQFPEE268 pKa = 4.36WTPSDD273 pKa = 3.76GLLCAIAATGFIGTFIDD290 pKa = 4.14DD291 pKa = 3.58WTEE294 pKa = 3.58YY295 pKa = 9.47TYY297 pKa = 11.49KK298 pKa = 10.7LEE300 pKa = 4.19SVTDD304 pKa = 3.95SVGMRR309 pKa = 11.84ASYY312 pKa = 10.89AVLGG316 pKa = 4.02

Molecular weight: 34.55 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KLW6|A0A1L3KLW6_9VIRU RdRp OS=Xinzhou partiti-like virus 1 OX=1923776 PE=4 SV=1
MM1 pKa = 7.0STLEE5 pKa = 4.42FVRR8 pKa = 11.84QLPSYY13 pKa = 11.39SLMQHH18 pKa = 5.97GTPCDD23 pKa = 3.51LYY25 pKa = 11.57ARR27 pKa = 11.84GLINALYY34 pKa = 9.96PEE36 pKa = 4.99ALPSIDD42 pKa = 3.47EE43 pKa = 4.35YY44 pKa = 11.62SRR46 pKa = 11.84GMYY49 pKa = 10.07DD50 pKa = 3.58IEE52 pKa = 3.98HH53 pKa = 7.33HH54 pKa = 5.42YY55 pKa = 8.88TAFYY59 pKa = 10.09KK60 pKa = 10.56YY61 pKa = 10.54SRR63 pKa = 11.84PQYY66 pKa = 9.9LEE68 pKa = 3.33QAIKK72 pKa = 10.45HH73 pKa = 5.56RR74 pKa = 11.84LEE76 pKa = 4.1SSSLIKK82 pKa = 9.82EE83 pKa = 3.51ARR85 pKa = 11.84AIVEE89 pKa = 4.3SEE91 pKa = 3.9LTEE94 pKa = 4.31SFTVQAISMSHH105 pKa = 6.58LDD107 pKa = 3.19AVSFVGSSAAGYY119 pKa = 10.18GYY121 pKa = 10.9VGNKK125 pKa = 8.47RR126 pKa = 11.84DD127 pKa = 3.48NYY129 pKa = 10.51LVARR133 pKa = 11.84GHH135 pKa = 5.91ATSNLANFRR144 pKa = 11.84RR145 pKa = 11.84WGSKK149 pKa = 9.94LRR151 pKa = 11.84LTPYY155 pKa = 9.65KK156 pKa = 10.42AYY158 pKa = 10.92SRR160 pKa = 11.84TQLALRR166 pKa = 11.84ADD168 pKa = 3.67PKK170 pKa = 10.53IRR172 pKa = 11.84HH173 pKa = 4.48VWGAPFHH180 pKa = 6.5TILIEE185 pKa = 4.02GTIAQPIIVNLQLYY199 pKa = 7.38DD200 pKa = 3.5QPIYY204 pKa = 10.2IGKK207 pKa = 10.09DD208 pKa = 3.05MFKK211 pKa = 10.45EE212 pKa = 3.93LPYY215 pKa = 10.33TLNRR219 pKa = 11.84LLRR222 pKa = 11.84DD223 pKa = 3.4NFFAYY228 pKa = 10.55CIDD231 pKa = 3.14ISAFDD236 pKa = 3.58SSVNQIFIDD245 pKa = 3.52WFFDD249 pKa = 4.2FVSKK253 pKa = 9.64TVTFPNAFTRR263 pKa = 11.84SAVDD267 pKa = 2.94YY268 pKa = 11.15CRR270 pKa = 11.84FEE272 pKa = 5.0LKK274 pKa = 8.8HH275 pKa = 6.07TPVVMPDD282 pKa = 2.38GKK284 pKa = 10.46MYY286 pKa = 10.16ICHH289 pKa = 6.61TGIPSGSYY297 pKa = 7.66FTQLIDD303 pKa = 3.74SYY305 pKa = 11.79VNLIMLRR312 pKa = 11.84ACQLSILEE320 pKa = 4.61SVVPTYY326 pKa = 11.45VLGDD330 pKa = 3.51DD331 pKa = 5.96SIFCHH336 pKa = 6.53HH337 pKa = 6.73NPNHH341 pKa = 6.28LEE343 pKa = 3.91SFRR346 pKa = 11.84VLFEE350 pKa = 3.9EE351 pKa = 5.81FGFKK355 pKa = 10.91LNVRR359 pKa = 11.84KK360 pKa = 8.38TIVSKK365 pKa = 10.82SSQEE369 pKa = 3.83IVFLGHH375 pKa = 6.17NFYY378 pKa = 11.08GSRR381 pKa = 11.84LTRR384 pKa = 11.84DD385 pKa = 4.05DD386 pKa = 3.59FTLACLAIHH395 pKa = 6.58TEE397 pKa = 4.25TPIVNSSQTVVRR409 pKa = 11.84LASLLYY415 pKa = 10.61DD416 pKa = 3.64SGHH419 pKa = 6.14NSFFLMNLLTAAIKK433 pKa = 10.27RR434 pKa = 11.84YY435 pKa = 9.18GSPRR439 pKa = 11.84PLHH442 pKa = 6.08PPYY445 pKa = 10.65VQLFMLSS452 pKa = 3.25

Molecular weight: 51.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

768

316

452

384.0

43.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.682 ± 1.133

1.432 ± 0.104

5.078 ± 0.387

3.906 ± 0.266

4.948 ± 1.313

5.599 ± 0.852

2.995 ± 0.685

6.51 ± 0.113

3.125 ± 0.371

9.766 ± 0.764

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.823 ± 0.348

4.036 ± 0.048

5.859 ± 0.888

3.776 ± 0.409

5.729 ± 0.021

8.464 ± 0.741

5.99 ± 0.41

7.031 ± 0.946

1.302 ± 0.571

4.948 ± 0.917
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski