Ostreid herpesvirus 1 (isolate France) (OsHV-1) (Pacific oyster herpesvirus)

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Malacoherpesviridae; Ostreavirus; Ostreid herpesvirus 1

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 116 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q6R797|Y118_OSHVF Putative RING finger protein ORF118 OS=Ostreid herpesvirus 1 (isolate France) OX=654903 GN=ORF118 PE=4 SV=1
MM1 pKa = 7.35AAVALTYY8 pKa = 7.45MIPPATPLAIIDD20 pKa = 4.04FDD22 pKa = 4.19MLPEE26 pKa = 4.99DD27 pKa = 5.0DD28 pKa = 4.37EE29 pKa = 5.07SEE31 pKa = 4.37EE32 pKa = 4.29VGFEE36 pKa = 4.44YY37 pKa = 10.77EE38 pKa = 6.37DD39 pKa = 4.09LLDD42 pKa = 3.82WQLKK46 pKa = 8.26EE47 pKa = 4.1AVDD50 pKa = 3.96RR51 pKa = 11.84RR52 pKa = 11.84DD53 pKa = 3.65LEE55 pKa = 4.25SFTILIEE62 pKa = 4.31EE63 pKa = 4.36NWCHH67 pKa = 7.38DD68 pKa = 3.72LTLEE72 pKa = 5.16NGDD75 pKa = 3.76NLLGYY80 pKa = 8.69MIKK83 pKa = 10.0QGHH86 pKa = 6.78ALTEE90 pKa = 3.74EE91 pKa = 4.44WYY93 pKa = 10.37DD94 pKa = 4.08LIGVTTTCHH103 pKa = 6.3ANPEE107 pKa = 4.24GEE109 pKa = 4.43LPIDD113 pKa = 4.48LLRR116 pKa = 11.84KK117 pKa = 9.47HH118 pKa = 6.55LGSCRR123 pKa = 11.84CNLEE127 pKa = 4.43SMNCDD132 pKa = 2.76LVEE135 pKa = 4.04YY136 pKa = 10.26IIRR139 pKa = 11.84TCYY142 pKa = 9.94AHH144 pKa = 7.46PINRR148 pKa = 11.84DD149 pKa = 3.45YY150 pKa = 11.26VYY152 pKa = 11.11HH153 pKa = 7.39RR154 pKa = 11.84MDD156 pKa = 3.44TSRR159 pKa = 11.84YY160 pKa = 4.41THH162 pKa = 6.42KK163 pKa = 10.76RR164 pKa = 11.84LNRR167 pKa = 11.84NHH169 pKa = 6.65NLTLSIEE176 pKa = 4.13KK177 pKa = 10.48KK178 pKa = 9.98PIIVEE183 pKa = 4.06APPMEE188 pKa = 4.35EE189 pKa = 4.02EE190 pKa = 4.55EE191 pKa = 4.07ISEE194 pKa = 4.57VEE196 pKa = 3.99DD197 pKa = 3.71ALNVLQRR204 pKa = 11.84LCAQEE209 pKa = 4.77EE210 pKa = 4.61GDD212 pKa = 3.77NKK214 pKa = 10.5EE215 pKa = 5.05AEE217 pKa = 4.58TNNNNYY223 pKa = 8.53VFPWMTPAYY232 pKa = 7.88EE233 pKa = 4.46LPEE236 pKa = 3.88QLTFYY241 pKa = 10.57DD242 pKa = 3.65MPMTPFNCNNVMYY255 pKa = 10.41CC256 pKa = 4.09

Molecular weight: 29.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q6R7J0|Y034_OSHVF Uncharacterized protein ORF34 OS=Ostreid herpesvirus 1 (isolate France) OX=654903 GN=ORF34 PE=4 SV=1
MM1 pKa = 7.19STTEE5 pKa = 3.71QTVCEE10 pKa = 4.14IEE12 pKa = 4.23QEE14 pKa = 4.41SEE16 pKa = 4.53LIPAKK21 pKa = 9.63PQYY24 pKa = 10.65IIVKK28 pKa = 9.46KK29 pKa = 9.85PKK31 pKa = 7.87RR32 pKa = 11.84QAWQRR37 pKa = 11.84VLLLFRR43 pKa = 11.84IINMIVIWAALIALFVKK60 pKa = 10.24LYY62 pKa = 9.87ILRR65 pKa = 11.84GPIPRR70 pKa = 11.84SYY72 pKa = 10.89FHH74 pKa = 6.6YY75 pKa = 10.81

Molecular weight: 8.92 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

116

0

116

51428

75

1878

443.3

50.72

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.095 ± 0.142

1.923 ± 0.122

6.85 ± 0.135

7.539 ± 0.175

4.122 ± 0.085

4.974 ± 0.121

1.925 ± 0.08

7.123 ± 0.154

7.982 ± 0.206

7.966 ± 0.166

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.535 ± 0.123

5.658 ± 0.128

4.305 ± 0.214

2.641 ± 0.071

4.964 ± 0.146

6.234 ± 0.143

6.213 ± 0.166

6.098 ± 0.104

0.842 ± 0.047

4.011 ± 0.1
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski