Tortispora caseinolytica NRRL Y-17796

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Saccharomycotina; Saccharomycetes; Saccharomycetales; Trigonopsidaceae; Tortispora; Tortispora caseinolytica

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4657 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1E4T9R0|A0A1E4T9R0_9ASCO Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 OX=767744 GN=CANCADRAFT_46371 PE=4 SV=1
MM1 pKa = 7.68LSTVTLTEE9 pKa = 4.03TSLCKK14 pKa = 10.25PPTTTTTVYY23 pKa = 10.48EE24 pKa = 4.26KK25 pKa = 9.97TYY27 pKa = 10.79SSANGIVTAYY37 pKa = 10.62DD38 pKa = 4.26DD39 pKa = 3.94YY40 pKa = 11.61CLPEE44 pKa = 4.23TKK46 pKa = 10.29FVDD49 pKa = 3.45NVYY52 pKa = 10.57CYY54 pKa = 11.15ACTPTVLTYY63 pKa = 10.52VPKK66 pKa = 10.83GPLVNDD72 pKa = 2.94SHH74 pKa = 6.38TYY76 pKa = 9.42VWGLYY81 pKa = 8.05QEE83 pKa = 4.68ISFSVSIAFDD93 pKa = 3.15ITIEE97 pKa = 4.12KK98 pKa = 9.39PIAVTKK104 pKa = 10.28FEE106 pKa = 4.37NADD109 pKa = 4.02AIQTTLSSVALMPVIPLSSNQASISSEE136 pKa = 3.33ISTSPSSILATTSTFSNISVGEE158 pKa = 3.86GAIIGVASATAVEE171 pKa = 4.51STTVQEE177 pKa = 4.66RR178 pKa = 11.84PTAYY182 pKa = 8.4ITSNDD187 pKa = 3.13IRR189 pKa = 11.84NGDD192 pKa = 3.42LTTIVEE198 pKa = 4.59SFKK201 pKa = 11.24EE202 pKa = 4.05MAVSSSVEE210 pKa = 3.58ISSFAQLSSSYY221 pKa = 11.04AEE223 pKa = 4.14SSPALTSLISSSVVQNDD240 pKa = 2.88ISSSYY245 pKa = 10.29PPTSIPKK252 pKa = 9.34VDD254 pKa = 4.06SSSMDD259 pKa = 3.35AVIVAPEE266 pKa = 3.97YY267 pKa = 11.26SLDD270 pKa = 4.06PGPDD274 pKa = 3.72RR275 pKa = 11.84IPQSEE280 pKa = 4.41MVDD283 pKa = 4.23DD284 pKa = 5.64IIKK287 pKa = 11.03SMIDD291 pKa = 3.17GLIIATHH298 pKa = 6.37LPVVSIDD305 pKa = 3.68PGEE308 pKa = 4.76HH309 pKa = 6.57NDD311 pKa = 3.66DD312 pKa = 3.91TVSDD316 pKa = 4.07GLVGDD321 pKa = 4.6NEE323 pKa = 4.94LDD325 pKa = 3.37TGIVDD330 pKa = 3.96SSEE333 pKa = 4.06DD334 pKa = 3.94EE335 pKa = 4.1SWSDD339 pKa = 3.24IVQDD343 pKa = 3.5VDD345 pKa = 4.8DD346 pKa = 4.94EE347 pKa = 4.64EE348 pKa = 5.32SVIDD352 pKa = 5.54LEE354 pKa = 5.03NPDD357 pKa = 5.13LLGDD361 pKa = 4.52DD362 pKa = 4.81YY363 pKa = 12.08AEE365 pKa = 4.12EE366 pKa = 4.07WSDD369 pKa = 4.04LNEE372 pKa = 5.17DD373 pKa = 3.57GSAVDD378 pKa = 4.87GVVSTDD384 pKa = 3.81DD385 pKa = 4.38LVPDD389 pKa = 3.62TTGIAEE395 pKa = 4.16TDD397 pKa = 3.77FGSEE401 pKa = 3.66SGTNISGLVGEE412 pKa = 4.56DD413 pKa = 3.42MSWTVSRR420 pKa = 11.84LEE422 pKa = 4.82DD423 pKa = 3.51YY424 pKa = 11.4SGDD427 pKa = 3.76TEE429 pKa = 4.36VTIDD433 pKa = 4.29KK434 pKa = 10.7ADD436 pKa = 3.39KK437 pKa = 10.77

Molecular weight: 46.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1E4TJU4|A0A1E4TJU4_9ASCO Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 OX=767744 GN=CANCADRAFT_11734 PE=4 SV=1
MM1 pKa = 7.57HH2 pKa = 7.03NQRR5 pKa = 11.84HH6 pKa = 4.78QPSMLQLIMSQPSTFQRR23 pKa = 11.84RR24 pKa = 11.84LKK26 pKa = 10.93SRR28 pKa = 11.84GNTYY32 pKa = 10.22QPSTLRR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 10.01RR41 pKa = 11.84KK42 pKa = 9.22FGFLARR48 pKa = 11.84LRR50 pKa = 11.84SRR52 pKa = 11.84TGKK55 pKa = 10.47KK56 pKa = 9.17ILARR60 pKa = 11.84RR61 pKa = 11.84KK62 pKa = 10.12LKK64 pKa = 10.49GRR66 pKa = 11.84WRR68 pKa = 11.84LTHH71 pKa = 6.58

Molecular weight: 8.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4656

1

4657

2057799

50

4853

441.9

49.25

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.834 ± 0.03

1.312 ± 0.015

5.944 ± 0.027

6.125 ± 0.032

4.032 ± 0.026

5.532 ± 0.036

2.234 ± 0.017

6.048 ± 0.025

5.461 ± 0.03

9.533 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.149 ± 0.012

4.199 ± 0.017

5.016 ± 0.03

3.643 ± 0.025

5.218 ± 0.024

9.164 ± 0.062

5.667 ± 0.021

6.361 ± 0.023

1.128 ± 0.012

3.399 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski