Chaco virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Sripuvirus; Chaco sripuvirus

Average proteome isoelectric point is 6.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D3R174|A0A0D3R174_9RHAB Matrix OS=Chaco virus OX=1158189 PE=4 SV=1
MM1 pKa = 7.53GEE3 pKa = 4.16SPINNYY9 pKa = 9.54HH10 pKa = 6.4FSDD13 pKa = 4.67FEE15 pKa = 4.44MTDD18 pKa = 3.02STLDD22 pKa = 3.44LSEE25 pKa = 4.47YY26 pKa = 10.89NVLEE30 pKa = 4.14INAIPEE36 pKa = 4.26GLQQWEE42 pKa = 4.28IKK44 pKa = 10.13SRR46 pKa = 11.84QIDD49 pKa = 3.84NILYY53 pKa = 10.57ALAQLGIRR61 pKa = 11.84CDD63 pKa = 3.85YY64 pKa = 11.16LVDD67 pKa = 4.26DD68 pKa = 4.33VDD70 pKa = 4.6SIKK73 pKa = 10.77FKK75 pKa = 11.26LDD77 pKa = 3.46FDD79 pKa = 4.61PPLYY83 pKa = 10.61SYY85 pKa = 11.13EE86 pKa = 4.63RR87 pKa = 11.84DD88 pKa = 3.49TDD90 pKa = 3.6DD91 pKa = 3.59SFIYY95 pKa = 10.48FDD97 pKa = 5.05EE98 pKa = 5.52PDD100 pKa = 4.3DD101 pKa = 5.5LDD103 pKa = 5.69DD104 pKa = 6.31LFTLIDD110 pKa = 5.33DD111 pKa = 4.06EE112 pKa = 4.73EE113 pKa = 4.4FWW115 pKa = 5.16

Molecular weight: 13.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D3R1M6|A0A0D3R1M6_9RHAB Phosphoprotein OS=Chaco virus OX=1158189 PE=4 SV=1
MM1 pKa = 7.78IILPIEE7 pKa = 3.95MFAPFIVIAFKK18 pKa = 10.67RR19 pKa = 11.84IRR21 pKa = 11.84KK22 pKa = 9.38IIIKK26 pKa = 10.02FLLATCANLNVQGEE40 pKa = 4.36IKK42 pKa = 10.36EE43 pKa = 4.09RR44 pKa = 11.84FYY46 pKa = 11.39LYY48 pKa = 9.27VTGMWEE54 pKa = 4.11IYY56 pKa = 9.86RR57 pKa = 11.84HH58 pKa = 5.19GRR60 pKa = 11.84KK61 pKa = 9.04QDD63 pKa = 3.48FQALLSEE70 pKa = 4.42EE71 pKa = 4.06LRR73 pKa = 11.84EE74 pKa = 4.33IRR76 pKa = 11.84YY77 pKa = 9.85DD78 pKa = 3.43PP79 pKa = 4.4

Molecular weight: 9.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

3758

79

2097

469.8

54.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.741 ± 0.428

2.076 ± 0.358

6.546 ± 0.803

6.067 ± 0.537

5.003 ± 0.418

5.695 ± 0.564

2.182 ± 0.185

9.5 ± 0.71

7.371 ± 0.553

9.047 ± 0.55

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.501 ± 0.285

5.774 ± 0.466

3.991 ± 0.309

2.954 ± 0.184

4.577 ± 0.347

8.089 ± 0.504

5.535 ± 0.497

4.657 ± 0.413

1.756 ± 0.281

3.938 ± 0.303
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski