Paenibacillus oryzae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus

Average proteome isoelectric point is 6.25

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5020 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1A5YC33|A0A1A5YC33_9BACL Hydrolase OS=Paenibacillus oryzae OX=1844972 GN=A7K91_23890 PE=4 SV=1
MM1 pKa = 7.85AKK3 pKa = 8.96FTWVEE8 pKa = 3.45KK9 pKa = 9.45DD10 pKa = 3.02TCIACGACGATAPDD24 pKa = 3.47IYY26 pKa = 11.02DD27 pKa = 3.64YY28 pKa = 11.51DD29 pKa = 4.43DD30 pKa = 3.97EE31 pKa = 5.79GLAEE35 pKa = 4.52VIFDD39 pKa = 3.5GDD41 pKa = 3.42KK42 pKa = 11.07NRR44 pKa = 11.84GVTAIPDD51 pKa = 3.59DD52 pKa = 4.48MFDD55 pKa = 5.12DD56 pKa = 4.2MQDD59 pKa = 3.28ACDD62 pKa = 3.94GCPTDD67 pKa = 4.24SIKK70 pKa = 10.77IADD73 pKa = 4.02EE74 pKa = 4.13PFNAEE79 pKa = 3.85GG80 pKa = 3.55

Molecular weight: 8.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1A5YM81|A0A1A5YM81_9BACL Uncharacterized protein OS=Paenibacillus oryzae OX=1844972 GN=A7K91_00110 PE=4 SV=1
MM1 pKa = 7.9RR2 pKa = 11.84PTFKK6 pKa = 10.84PNVSKK11 pKa = 10.73RR12 pKa = 11.84AKK14 pKa = 8.72VHH16 pKa = 5.43GFRR19 pKa = 11.84KK20 pKa = 10.02RR21 pKa = 11.84MSSKK25 pKa = 10.47NGRR28 pKa = 11.84KK29 pKa = 9.01VLAARR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 10.23GRR39 pKa = 11.84KK40 pKa = 8.56VLSAA44 pKa = 4.05

Molecular weight: 5.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5020

0

5020

1677518

26

3049

334.2

37.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.773 ± 0.042

0.757 ± 0.011

5.06 ± 0.028

6.906 ± 0.034

4.063 ± 0.026

7.824 ± 0.036

2.018 ± 0.018

6.485 ± 0.029

5.222 ± 0.027

10.405 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.811 ± 0.018

3.762 ± 0.028

3.966 ± 0.02

3.757 ± 0.02

5.047 ± 0.027

6.562 ± 0.027

5.05 ± 0.029

6.765 ± 0.03

1.276 ± 0.012

3.489 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski