Soybean vein necrosis virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus; Soybean vein necrosis orthotospovirus

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|F2Y3N6|F2Y3N6_9VIRU Non-structural protein OS=Soybean vein necrosis virus OX=980895 PE=4 SV=1
MM1 pKa = 7.91RR2 pKa = 11.84IKK4 pKa = 10.86DD5 pKa = 3.61FFVIMLLFGLNLVFLSIFINASIRR29 pKa = 11.84GDD31 pKa = 3.46HH32 pKa = 6.39EE33 pKa = 4.65VSQEE37 pKa = 3.89TSFEE41 pKa = 4.11EE42 pKa = 4.07LSKK45 pKa = 11.17EE46 pKa = 3.91VMEE49 pKa = 4.29AHH51 pKa = 6.03EE52 pKa = 4.09QGKK55 pKa = 9.67IGKK58 pKa = 8.54SLVSSRR64 pKa = 11.84VEE66 pKa = 3.64AFEE69 pKa = 4.45SFNKK73 pKa = 10.15EE74 pKa = 3.73PIEE77 pKa = 3.94TSRR80 pKa = 11.84RR81 pKa = 11.84PEE83 pKa = 3.67MNDD86 pKa = 4.02RR87 pKa = 11.84ITQTKK92 pKa = 9.63PGIDD96 pKa = 3.43DD97 pKa = 3.44QMIPKK102 pKa = 9.76HH103 pKa = 6.25GEE105 pKa = 4.16GKK107 pKa = 10.16RR108 pKa = 11.84EE109 pKa = 3.94APPPSKK115 pKa = 11.0VDD117 pKa = 3.74LSCANINPEE126 pKa = 3.68NCKK129 pKa = 10.34VVGKK133 pKa = 8.49TPFNFYY139 pKa = 10.59YY140 pKa = 10.31QISDD144 pKa = 3.68SEE146 pKa = 4.33EE147 pKa = 4.25TISCLSSKK155 pKa = 10.82VEE157 pKa = 4.57DD158 pKa = 4.35LKK160 pKa = 11.51ACNPQSMHH168 pKa = 5.85VFTSAPVLPITTILNKK184 pKa = 10.04RR185 pKa = 11.84VLSVGSKK192 pKa = 10.64YY193 pKa = 10.83YY194 pKa = 9.78IQNSIDD200 pKa = 3.44SSSFPVQDD208 pKa = 3.37SGNVQLGLVNIYY220 pKa = 8.46SVRR223 pKa = 11.84LTGEE227 pKa = 3.98CNITKK232 pKa = 10.03VSLTNPFFVTLTSSNKK248 pKa = 6.99EE249 pKa = 3.8TFYY252 pKa = 10.94SIKK255 pKa = 10.48KK256 pKa = 9.94IGADD260 pKa = 3.53DD261 pKa = 3.72VNLIKK266 pKa = 10.76FSGEE270 pKa = 3.81KK271 pKa = 9.39TVEE274 pKa = 4.07LPSDD278 pKa = 3.87SVDD281 pKa = 3.43GNHH284 pKa = 6.49VLLCGDD290 pKa = 4.17KK291 pKa = 10.82VSEE294 pKa = 4.15IPKK297 pKa = 9.43IDD299 pKa = 3.56VNKK302 pKa = 10.28RR303 pKa = 11.84NCLVKK308 pKa = 10.93YY309 pKa = 9.93KK310 pKa = 10.54GKK312 pKa = 10.46RR313 pKa = 11.84YY314 pKa = 8.06QQSACVHH321 pKa = 5.66FNILRR326 pKa = 11.84YY327 pKa = 9.69LLVSIILFVPVSWFLNKK344 pKa = 9.97TKK346 pKa = 11.0DD347 pKa = 5.21SMFLWYY353 pKa = 10.0DD354 pKa = 3.01FLGIIFYY361 pKa = 9.9PILYY365 pKa = 9.1ILNWLWRR372 pKa = 11.84YY373 pKa = 9.47FPMKK377 pKa = 10.32CSNCGNFSLITHH389 pKa = 6.32SCYY392 pKa = 9.73DD393 pKa = 3.3TCVCNKK399 pKa = 9.9SKK401 pKa = 10.93AKK403 pKa = 10.35SEE405 pKa = 4.03HH406 pKa = 6.74AEE408 pKa = 3.75NCPIITGKK416 pKa = 10.48AFSKK420 pKa = 11.07SEE422 pKa = 3.97DD423 pKa = 3.45QDD425 pKa = 3.7VDD427 pKa = 3.82DD428 pKa = 5.73LSVEE432 pKa = 4.24EE433 pKa = 4.69TEE435 pKa = 5.08SLTGSKK441 pKa = 10.06KK442 pKa = 9.79PKK444 pKa = 9.23KK445 pKa = 9.86ASSKK449 pKa = 10.05FRR451 pKa = 11.84TFQLVVNTKK460 pKa = 9.66ISTGFLMFVTKK471 pKa = 10.65VLLGFLIFSQMPKK484 pKa = 9.75TMASKK489 pKa = 8.98TATQTISQTEE499 pKa = 4.24TQVLCVSYY507 pKa = 10.81CSAKK511 pKa = 10.06PGCNKK516 pKa = 9.72FLFKK520 pKa = 11.1NEE522 pKa = 4.06EE523 pKa = 3.96VCIDD527 pKa = 3.85NPKK530 pKa = 10.34LKK532 pKa = 10.31CNCLIRR538 pKa = 11.84DD539 pKa = 3.55GMINEE544 pKa = 4.01EE545 pKa = 4.22AYY547 pKa = 10.03INGTRR552 pKa = 11.84YY553 pKa = 9.72SVSMVDD559 pKa = 2.89NCLDD563 pKa = 3.54RR564 pKa = 11.84RR565 pKa = 11.84CEE567 pKa = 3.76FSSNKK572 pKa = 9.48VEE574 pKa = 5.25DD575 pKa = 4.26LLACRR580 pKa = 11.84LGCGQLKK587 pKa = 10.08KK588 pKa = 10.74LKK590 pKa = 10.26SSKK593 pKa = 10.26LQSKK597 pKa = 9.54ALKK600 pKa = 10.08QGIVPRR606 pKa = 11.84GASISQIYY614 pKa = 10.31SSLRR618 pKa = 11.84LQDD621 pKa = 4.11GYY623 pKa = 10.78IDD625 pKa = 4.09SEE627 pKa = 4.45EE628 pKa = 4.29SLHH631 pKa = 7.34SLGDD635 pKa = 3.6LPEE638 pKa = 4.31NKK640 pKa = 9.71VKK642 pKa = 10.56IEE644 pKa = 4.67DD645 pKa = 3.48EE646 pKa = 4.84DD647 pKa = 3.86IPEE650 pKa = 4.44GVLPRR655 pKa = 11.84QSFVYY660 pKa = 10.59NSIVDD665 pKa = 3.57GKK667 pKa = 9.86YY668 pKa = 9.85RR669 pKa = 11.84YY670 pKa = 9.25LISMDD675 pKa = 4.97AIQSTGYY682 pKa = 9.78VYY684 pKa = 11.43SMNDD688 pKa = 2.79AKK690 pKa = 10.31MAPPQEE696 pKa = 3.72LVVFVKK702 pKa = 10.49EE703 pKa = 4.04AGVTYY708 pKa = 9.9TMKK711 pKa = 10.01TLYY714 pKa = 8.81YY715 pKa = 8.02TAPISATHH723 pKa = 4.55THH725 pKa = 6.12VYY727 pKa = 7.95STCTGNCEE735 pKa = 4.35TCRR738 pKa = 11.84KK739 pKa = 7.05EE740 pKa = 4.37HH741 pKa = 7.07PISGYY746 pKa = 8.75QDD748 pKa = 3.24YY749 pKa = 11.11CIAPTSNWGCEE760 pKa = 4.03EE761 pKa = 4.63LGCLAIGEE769 pKa = 4.64GATCGYY775 pKa = 9.0CRR777 pKa = 11.84NVYY780 pKa = 10.1DD781 pKa = 4.27LSKK784 pKa = 10.35KK785 pKa = 9.69YY786 pKa = 10.14SVRR789 pKa = 11.84QILTSHH795 pKa = 5.46VTVKK799 pKa = 10.58VCFKK803 pKa = 10.59GFAGTGCQTITDD815 pKa = 4.06SVPFQNSYY823 pKa = 10.06YY824 pKa = 10.03QLSIDD829 pKa = 4.63ADD831 pKa = 3.84LHH833 pKa = 7.16NDD835 pKa = 3.45DD836 pKa = 4.57LTAGSRR842 pKa = 11.84VAVDD846 pKa = 3.5PNGMLFKK853 pKa = 11.33GNIANLKK860 pKa = 10.15DD861 pKa = 3.19SSLAFGHH868 pKa = 6.23PQLNEE873 pKa = 3.84LGVLMFAKK881 pKa = 10.62ANLEE885 pKa = 3.95LSDD888 pKa = 4.14FTWSCAVIGNKK899 pKa = 9.78KK900 pKa = 10.19VDD902 pKa = 3.8VKK904 pKa = 11.15KK905 pKa = 10.73CGYY908 pKa = 8.68DD909 pKa = 3.07TFHH912 pKa = 7.33QYY914 pKa = 10.06IGLEE918 pKa = 4.29PISDD922 pKa = 3.92YY923 pKa = 10.98FADD926 pKa = 5.01EE927 pKa = 4.41IDD929 pKa = 4.31DD930 pKa = 3.46GTMFVKK936 pKa = 10.42KK937 pKa = 10.05DD938 pKa = 3.65FKK940 pKa = 10.53IGKK943 pKa = 9.2INLIVDD949 pKa = 4.46LPSEE953 pKa = 4.52LFQTIAKK960 pKa = 8.25KK961 pKa = 10.48PKK963 pKa = 7.99VAMVASACKK972 pKa = 10.39GCLSCSSGINCDD984 pKa = 4.28LEE986 pKa = 4.43FTSDD990 pKa = 3.84SIFSCRR996 pKa = 11.84ISWEE1000 pKa = 4.12HH1001 pKa = 6.14CTSEE1005 pKa = 4.19PEE1007 pKa = 3.91QIAMKK1012 pKa = 10.47KK1013 pKa = 7.53GTNVFKK1019 pKa = 11.07LKK1021 pKa = 10.39PCFALKK1027 pKa = 10.15IQLLQKK1033 pKa = 10.34IILVPSDD1040 pKa = 4.14DD1041 pKa = 3.52EE1042 pKa = 5.24SMALEE1047 pKa = 4.21FEE1049 pKa = 4.59TKK1051 pKa = 10.15NVEE1054 pKa = 3.68ISDD1057 pKa = 4.01PEE1059 pKa = 4.3TIIDD1063 pKa = 4.07HH1064 pKa = 6.9NDD1066 pKa = 3.07DD1067 pKa = 3.68AFNEE1071 pKa = 4.19EE1072 pKa = 4.09VEE1074 pKa = 4.3YY1075 pKa = 11.1DD1076 pKa = 3.2SDD1078 pKa = 3.9TSFKK1082 pKa = 11.11SVWDD1086 pKa = 4.14YY1087 pKa = 11.46IKK1089 pKa = 11.26SPFNWVASFFGDD1101 pKa = 3.39FFEE1104 pKa = 4.37IVRR1107 pKa = 11.84VLLVLTCCAVLFISISKK1124 pKa = 10.18LYY1126 pKa = 8.94EE1127 pKa = 3.77ICHH1130 pKa = 6.35EE1131 pKa = 4.42YY1132 pKa = 10.83YY1133 pKa = 10.69SQEE1136 pKa = 3.98QYY1138 pKa = 10.99KK1139 pKa = 10.42KK1140 pKa = 10.49SSRR1143 pKa = 11.84KK1144 pKa = 9.6KK1145 pKa = 10.66EE1146 pKa = 3.74GDD1148 pKa = 4.18LEE1150 pKa = 6.33DD1151 pKa = 5.81DD1152 pKa = 4.71DD1153 pKa = 4.91EE1154 pKa = 6.36KK1155 pKa = 11.17KK1156 pKa = 10.97AQDD1159 pKa = 4.98DD1160 pKa = 4.13IIKK1163 pKa = 10.32SLRR1166 pKa = 11.84NQVTEE1171 pKa = 3.65DD1172 pKa = 3.09TTYY1175 pKa = 11.1KK1176 pKa = 10.53RR1177 pKa = 11.84NSNKK1181 pKa = 8.24STRR1184 pKa = 11.84KK1185 pKa = 10.15APFDD1189 pKa = 3.75DD1190 pKa = 5.22LIIRR1194 pKa = 11.84VV1195 pKa = 3.71

Molecular weight:
134.32 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|F2Y3N7|F2Y3N7_9VIRU Nucleocapsid protein OS=Soybean vein necrosis virus OX=980895 PE=3 SV=1
MM1 pKa = 7.51PQTAGPSNAKK11 pKa = 8.57PAKK14 pKa = 8.76ITEE17 pKa = 4.3SNLAKK22 pKa = 10.46LLKK25 pKa = 10.25FEE27 pKa = 4.68EE28 pKa = 5.13DD29 pKa = 3.57IEE31 pKa = 4.35FEE33 pKa = 4.3KK34 pKa = 11.19NSTGFKK40 pKa = 10.25FSEE43 pKa = 5.09FYY45 pKa = 8.4KK46 pKa = 9.31THH48 pKa = 6.22MGRR51 pKa = 11.84KK52 pKa = 8.72FRR54 pKa = 11.84YY55 pKa = 9.21ASALTFLKK63 pKa = 10.41NRR65 pKa = 11.84KK66 pKa = 9.6AIVNMCKK73 pKa = 10.24KK74 pKa = 9.82GTFNFDD80 pKa = 2.95GQTVKK85 pKa = 10.99LSVEE89 pKa = 4.25SGDD92 pKa = 4.25DD93 pKa = 3.3NSFTFKK99 pKa = 10.92RR100 pKa = 11.84LDD102 pKa = 3.09SFLRR106 pKa = 11.84VKK108 pKa = 10.19MLEE111 pKa = 3.95HH112 pKa = 6.46NFAVFDD118 pKa = 4.0GTNEE122 pKa = 3.77EE123 pKa = 4.71AKK125 pKa = 10.55QSLCNDD131 pKa = 4.09LATIPLVQAYY141 pKa = 9.83GLTVKK146 pKa = 10.8DD147 pKa = 3.56KK148 pKa = 10.61MSAKK152 pKa = 9.6LAIMIGGSLPLLASITGCEE171 pKa = 4.16AYY173 pKa = 10.67CFGLAIFQDD182 pKa = 3.99LKK184 pKa = 11.05KK185 pKa = 9.96EE186 pKa = 3.77QLGIVNFDD194 pKa = 3.66TKK196 pKa = 11.15AQAAKK201 pKa = 10.03VASVLDD207 pKa = 3.64AKK209 pKa = 10.71GFKK212 pKa = 9.03FTEE215 pKa = 4.54EE216 pKa = 3.95KK217 pKa = 10.84NQTLRR222 pKa = 11.84LIAEE226 pKa = 4.42ILKK229 pKa = 11.01DD230 pKa = 3.41MAPQMRR236 pKa = 11.84GVASLEE242 pKa = 4.21KK243 pKa = 10.21YY244 pKa = 10.27NEE246 pKa = 4.03QIGIISDD253 pKa = 3.93IIGVHH258 pKa = 6.18FEE260 pKa = 4.12MPGKK264 pKa = 10.31KK265 pKa = 9.66DD266 pKa = 3.53GKK268 pKa = 9.79GKK270 pKa = 10.11KK271 pKa = 9.74SKK273 pKa = 10.26EE274 pKa = 3.77FSVV277 pKa = 3.57

Molecular weight:
30.75 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

5159

277

2931

1031.8

117.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.09 ± 0.677

2.384 ± 0.5

5.99 ± 0.328

6.978 ± 0.395

5.02 ± 0.508

5.117 ± 0.667

1.667 ± 0.209

7.269 ± 0.237

9.304 ± 0.545

9.033 ± 0.666

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.198 ± 0.451

5.582 ± 0.341

3.024 ± 0.422

2.811 ± 0.265

3.353 ± 0.391

9.343 ± 0.324

5.679 ± 0.5

5.408 ± 0.5

0.678 ± 0.165

4.071 ± 0.546

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski