Fonsecaea pedrosoi CBS 271.37

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Chaetothyriomycetidae; Chaetothyriales; Herpotrichiellaceae; Fonsecaea; Fonsecaea pedrosoi

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12525 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D2GPT8|A0A0D2GPT8_9EURO Unplaced genomic scaffold supercont1.4 whole genome shotgun sequence OS=Fonsecaea pedrosoi CBS 271.37 OX=1442368 GN=Z517_07151 PE=3 SV=1
MM1 pKa = 7.2YY2 pKa = 10.32LLAGTAIAALATSCAASPGYY22 pKa = 10.46LKK24 pKa = 10.94LGLQRR29 pKa = 11.84RR30 pKa = 11.84APPEE34 pKa = 3.5GRR36 pKa = 11.84LIRR39 pKa = 11.84RR40 pKa = 11.84QDD42 pKa = 3.09SGGSVDD48 pKa = 5.78ALVTQNTNKK57 pKa = 10.35AEE59 pKa = 4.04YY60 pKa = 9.86LVNITVGTPPQDD72 pKa = 3.48LSVTLDD78 pKa = 3.4TGSSDD83 pKa = 3.13LWIPASSAKK92 pKa = 10.27LCQQGKK98 pKa = 9.66CDD100 pKa = 5.14LGAFDD105 pKa = 4.95PSKK108 pKa = 10.81SSTYY112 pKa = 11.0NVIEE116 pKa = 4.12EE117 pKa = 4.38GGFNITYY124 pKa = 9.51VQVGDD129 pKa = 3.94TDD131 pKa = 3.88AGDD134 pKa = 3.49WSSDD138 pKa = 3.4TITVGGSPSIEE149 pKa = 3.93DD150 pKa = 3.37QQLGVATALFDD161 pKa = 3.29QHH163 pKa = 7.62GVMGIGFDD171 pKa = 3.94TIEE174 pKa = 4.84ASNDD178 pKa = 3.48SPNGVYY184 pKa = 10.33PSVLDD189 pKa = 3.72NLKK192 pKa = 9.08STGIIDD198 pKa = 3.89RR199 pKa = 11.84KK200 pKa = 10.69AFSLYY205 pKa = 10.96LNDD208 pKa = 5.03LEE210 pKa = 4.33ATKK213 pKa = 10.72GAVIFGGIDD222 pKa = 3.15TTKK225 pKa = 10.69YY226 pKa = 10.78SGDD229 pKa = 3.62LVALPLQPGPDD240 pKa = 3.71GSVSEE245 pKa = 4.44YY246 pKa = 10.56FVTLTSVSFTDD257 pKa = 3.34STGQTTQLSPEE268 pKa = 4.79GYY270 pKa = 10.08AQAALLDD277 pKa = 4.09SGTTNTLLTNDD288 pKa = 3.47VLAPLALGLGAVVDD302 pKa = 4.57PSGEE306 pKa = 4.13AYY308 pKa = 10.42LVPCSLSSANGTIDD322 pKa = 3.39YY323 pKa = 11.06SFGGEE328 pKa = 4.12DD329 pKa = 4.51GITIQVPVSQVVGGQVYY346 pKa = 8.74TSSEE350 pKa = 3.9FDD352 pKa = 3.99DD353 pKa = 4.61PSGGCVLAFGSTAEE367 pKa = 4.25GAGASIFGDD376 pKa = 3.4SFLRR380 pKa = 11.84SAYY383 pKa = 10.44AVFDD387 pKa = 4.17IDD389 pKa = 3.55NQMAALAQAVEE400 pKa = 4.61NEE402 pKa = 4.61DD403 pKa = 3.64STSSIVVFPTGTTIPSATVTATATGTQLTEE433 pKa = 4.27VVSEE437 pKa = 4.13TDD439 pKa = 3.16IPTASIQSSTLVPGTPTFSLEE460 pKa = 4.23AASSTATTTGGSSSSSSSAAANNAVNAAIPTAALLGLGLAAAGMVGLL507 pKa = 4.75

Molecular weight: 51.32 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D2DUE2|A0A0D2DUE2_9EURO Unplaced genomic scaffold supercont1.3 whole genome shotgun sequence OS=Fonsecaea pedrosoi CBS 271.37 OX=1442368 GN=Z517_04416 PE=4 SV=1
MM1 pKa = 7.84ASTTFLQRR9 pKa = 11.84APKK12 pKa = 10.27SSQQEE17 pKa = 3.81LSSPNTHH24 pKa = 6.31KK25 pKa = 10.79RR26 pKa = 11.84LASLPPEE33 pKa = 3.78IHH35 pKa = 7.1HH36 pKa = 7.12IIADD40 pKa = 3.73HH41 pKa = 6.86LPYY44 pKa = 10.1PDD46 pKa = 4.87LLSLKK51 pKa = 9.81LTDD54 pKa = 3.57TYY56 pKa = 11.06FAALVGPKK64 pKa = 9.06LTVKK68 pKa = 10.54SRR70 pKa = 11.84VSWVQSRR77 pKa = 11.84YY78 pKa = 8.63AQRR81 pKa = 11.84LPVPTSTKK89 pKa = 10.34LSFRR93 pKa = 11.84TDD95 pKa = 3.2EE96 pKa = 4.53LFVANPEE103 pKa = 3.86VNAILRR109 pKa = 11.84RR110 pKa = 11.84RR111 pKa = 11.84RR112 pKa = 11.84RR113 pKa = 11.84HH114 pKa = 5.9LEE116 pKa = 3.69CADD119 pKa = 3.47RR120 pKa = 11.84RR121 pKa = 11.84EE122 pKa = 4.19PKK124 pKa = 10.33AALGFSAFTEE134 pKa = 3.72VDD136 pKa = 3.34RR137 pKa = 11.84NVRR140 pKa = 11.84RR141 pKa = 11.84LQGAQQLDD149 pKa = 3.76TTACLVTGAPNCPAIPNLDD168 pKa = 3.56TKK170 pKa = 8.13VQRR173 pKa = 11.84YY174 pKa = 8.55RR175 pKa = 11.84NSVVSKK181 pKa = 8.81LTAPVLRR188 pKa = 11.84TVAWLRR194 pKa = 11.84GLQRR198 pKa = 11.84SFRR201 pKa = 11.84VSLSCAVAEE210 pKa = 4.49LSHH213 pKa = 6.03TPRR216 pKa = 11.84VLWSWFLATLKK227 pKa = 10.61LAFIVVVASVACTVCGWRR245 pKa = 11.84PPPVAFTNPP254 pKa = 3.13

Molecular weight: 28.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12525

0

12525

6141607

50

6165

490.3

54.28

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.629 ± 0.019

1.239 ± 0.008

5.737 ± 0.016

6.052 ± 0.021

3.74 ± 0.013

6.899 ± 0.02

2.468 ± 0.009

4.866 ± 0.014

4.668 ± 0.02

8.984 ± 0.025

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.146 ± 0.007

3.541 ± 0.01

6.051 ± 0.024

4.093 ± 0.014

6.188 ± 0.021

8.097 ± 0.026

6.06 ± 0.016

6.279 ± 0.016

1.492 ± 0.008

2.77 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski