Thermanaerovibrio acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883) (Selenomonas acidaminovorans)

Taxonomy: cellular organisms; Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Thermanaerovibrio; Thermanaerovibrio acidaminovorans

Average proteome isoelectric point is 6.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1737 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D1B5I5|D1B5I5_THEAS Uncharacterized protein OS=Thermanaerovibrio acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883) OX=525903 GN=Taci_1044 PE=4 SV=1
MM1 pKa = 7.84SSRR4 pKa = 11.84EE5 pKa = 3.81KK6 pKa = 10.19IAYY9 pKa = 9.53LKK11 pKa = 11.08GLIDD15 pKa = 3.9GLKK18 pKa = 10.21ISDD21 pKa = 3.9PDD23 pKa = 3.44MSKK26 pKa = 10.35VLSAVVEE33 pKa = 4.34SLDD36 pKa = 4.1ALAEE40 pKa = 4.25DD41 pKa = 5.46LEE43 pKa = 4.43NQALVVDD50 pKa = 4.55EE51 pKa = 3.95QRR53 pKa = 11.84EE54 pKa = 4.09VLEE57 pKa = 5.13EE58 pKa = 3.64ISSYY62 pKa = 11.18LDD64 pKa = 3.27QLDD67 pKa = 3.92EE68 pKa = 5.72DD69 pKa = 4.02ISSLEE74 pKa = 4.02DD75 pKa = 3.44RR76 pKa = 11.84VEE78 pKa = 4.28PCCGHH83 pKa = 6.74HH84 pKa = 6.01GHH86 pKa = 7.28HH87 pKa = 7.46DD88 pKa = 3.7GDD90 pKa = 4.34DD91 pKa = 4.63DD92 pKa = 4.6EE93 pKa = 7.28DD94 pKa = 4.69EE95 pKa = 5.29DD96 pKa = 4.57DD97 pKa = 3.89EE98 pKa = 5.56EE99 pKa = 4.75YY100 pKa = 11.6VSVCCPHH107 pKa = 6.59CGKK110 pKa = 10.41DD111 pKa = 3.52FFYY114 pKa = 11.17DD115 pKa = 3.24PDD117 pKa = 5.51AYY119 pKa = 10.82DD120 pKa = 3.52EE121 pKa = 6.03DD122 pKa = 4.85EE123 pKa = 5.86DD124 pKa = 5.25LLCPHH129 pKa = 7.03CGEE132 pKa = 4.27PFDD135 pKa = 5.51RR136 pKa = 11.84SEE138 pKa = 3.78

Molecular weight: 15.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D1B9L7|D1B9L7_THEAS S-adenosylmethionine decarboxylase proenzyme OS=Thermanaerovibrio acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883) OX=525903 GN=Taci_0737 PE=3 SV=1
MM1 pKa = 7.28KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.04QPHH8 pKa = 4.86NTPRR12 pKa = 11.84KK13 pKa = 8.19RR14 pKa = 11.84SMGFLVRR21 pKa = 11.84SASASGRR28 pKa = 11.84RR29 pKa = 11.84VLRR32 pKa = 11.84NRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.69GRR39 pKa = 11.84KK40 pKa = 8.69RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1737

0

1737

566890

31

1651

326.4

35.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.862 ± 0.064

1.266 ± 0.021

5.386 ± 0.042

6.779 ± 0.055

3.545 ± 0.039

9.575 ± 0.065

1.814 ± 0.027

4.701 ± 0.041

3.579 ± 0.048

10.971 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.187 ± 0.027

2.237 ± 0.032

4.957 ± 0.039

2.685 ± 0.03

7.947 ± 0.057

6.271 ± 0.05

3.87 ± 0.038

8.843 ± 0.056

1.265 ± 0.02

2.26 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski